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reactome.db
•
reset
3
votes
4
replies
2.3k
views
Download of package ‘reactome.db’ failed (Ubuntu, not for Windows)
reactome.db
ReactomePA
3.2 years ago
florianjt
• 0
5
votes
6
replies
2.5k
views
Download errors during Bioconductor 3.12 update
reactome.db
Bioconductor
BiocManager
updated 3.5 years ago by
Martin Morgan
25k • written 3.5 years ago by
Michael Steinbaugh
▴ 90
0
votes
5
replies
1.9k
views
ReactomePA / Reactome: Crash when plotting
reactomepa
reactomepa reactome bioconductor viewpathway
reactome.db
reactome
5.9 years ago
martin.busch
• 0
3
votes
4
replies
1.9k
views
Enrichment Analysis for Shot-gun proteomics data using the ReactomePA package: problem with identities loss
reactomepa
reactome.db
reactome
proteomics
uniprot accessions
updated 6.5 years ago by
willem.ligtenberg
▴ 150 • written 6.5 years ago by
Miguel.Cosenza
▴ 10
0
votes
1
reply
1.1k
views
Retrieve the reactome ID of a protein
reactome.db
updated 6.8 years ago by
alserg
▴ 260 • written 6.8 years ago by
Lluís Revilla Sancho
▴ 730
0
votes
5
replies
2.6k
views
reactome.db installation problem
reactome.db
bioclite
7.0 years ago
Jan-Jaap
• 0
6
votes
15
replies
2.9k
views
Change in pathway IDs scheme in reactome.db
reactome.db
fgsea
updated 7.1 years ago by
willem.ligtenberg
▴ 150 • written 7.1 years ago by
alserg
▴ 260
3
votes
7
replies
2.1k
views
Misleading information in reactome.db
reactome.db
7.2 years ago
Lluís Revilla Sancho
▴ 730
1
vote
1
reply
1.3k
views
Unable to see reactome.db dbschema
reactome.db
rsqlite
updated 7.3 years ago by
willem.ligtenberg
▴ 150 • written 7.3 years ago by
Lluís Revilla Sancho
▴ 730
3
votes
5
replies
1.7k
views
Selecting few ids from reactome.db
annotationdbi
reactome.db
bug
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
Lluís Revilla Sancho
▴ 730
0
votes
6
replies
1.5k
views
Is reactome.db still updated?
reactome.db
annotation
pathways
7.5 years ago
Guido Hooiveld
★ 3.9k
5
votes
6
replies
2.5k
views
Reactome pathway names from IDs?
biomart
reactome
reactome.db
id
updated 8.5 years ago by
James W. MacDonald
65k • written 8.5 years ago by
enricoferrero
▴ 660
0
votes
1
reply
1.3k
views
Reactome's bug of feature?
reactome.db
updated 8.7 years ago by
willem.ligtenberg
▴ 150 • written 8.7 years ago by
petyuk
▴ 70
8
votes
14
replies
3.8k
views
reactome.db is not updated?
genesetenrichment
pathways
reactome.db
updated 9.1 years ago by
willem.ligtenberg
▴ 150 • written 9.5 years ago by
Guangchuang Yu
★ 1.2k
14 results • Page
1 of 1
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Replies
Comment: Too many significant genes when integrating gtex and tcga
by
ATpoint
★ 4.1k
These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…
Answer: fgsea significant result
by
ATpoint
★ 4.1k
Set a fixed seed before running this. Note that a FDR of 0.25 in fgsea is wildly and overly lenient. See https://support.bioconductor.o…
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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