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Showing :
recount3
•
reset
0
votes
3
replies
512
views
Merging multi-fastq samples in recount3
recount3
written 3 months ago by
Charlotte Capitanchik
• 0
0
votes
4
replies
949
views
Recount3: PCR duplicates
pcrduplicates
recount3
multimappingreads
updated 3 months ago by
ATpoint
★ 4.5k • written 18 months ago by
seline.natalie
• 0
0
votes
1
reply
518
views
Recount3 error downloading data
recount3
recount
updated 5 months ago by
Leonardo Collado Torres
★ 1.1k • written 9 months ago by
Max Bone
• 0
4
votes
3
replies
633
views
recount3 problem downloading data from source sra
recount3
updated 6 months ago by
Leonardo Collado Torres
★ 1.1k • written 6 months ago by
PABLO ANTONIO
▴ 10
1
vote
1
reply
497
views
Transcript level expression for CCLE
recount3
recount
CCLE
updated 9 months ago by
Leonardo Collado Torres
★ 1.1k • written 9 months ago by
António Miguel de Jesus Domingues
▴ 510
0
votes
2
replies
848
views
TCGA counts to TPM from recount3 do not seem to right
recount3
TCGA
RNASeq
updated 12 months ago by
Leonardo Collado Torres
★ 1.1k • written 13 months ago by
tangming2005
▴ 200
0
votes
2
replies
890
views
recount3 monorail pipeline version
recount3
13 months ago • updated 11 months ago
Lorenzo
• 0
0
votes
3
replies
2.0k
views
Recount3 error with default "recount3_url" option
recount3
updated 18 months ago by
Leonardo Collado Torres
★ 1.1k • written 24 months ago by
Cornwell, Adam
▴ 110
0
votes
2
replies
1.1k
views
Recount3 data download problem
recount
recount3
updated 18 months ago by
Leonardo Collado Torres
★ 1.1k • written 23 months ago by
gamma.jian
▴ 10
2
votes
6
replies
1.7k
views
Unable to load data from duffel.rail
recount
recountWorkflow
recount3
updated 18 months ago by
Leonardo Collado Torres
★ 1.1k • written 23 months ago by
Max Bone
• 0
2
votes
11
replies
2.0k
views
Not able to download recount3 data
recount3
updated 18 months ago by
Leonardo Collado Torres
★ 1.1k • written 23 months ago by
Niveditha
▴ 20
0
votes
2
replies
965
views
Cannot download data from IDIES links
recount
recountWorkflow
recount3
updated 18 months ago by
Leonardo Collado Torres
★ 1.1k • written 23 months ago by
dml
• 0
1
vote
3
replies
1.4k
views
Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
DESeq2
recount
GTEx
TCGA
recount3
updated 18 months ago by
ATpoint
★ 4.5k • written 18 months ago by
David
▴ 20
0
votes
1
reply
771
views
Recount3 data correspond to TCGA data
recount3
updated 17 months ago by
seline.natalie
• 0 • written 19 months ago by
kevin lee
• 0
2
votes
3
replies
1.1k
views
BigWig files provided by recount3
recount3
updated 20 months ago by
Leonardo Collado Torres
★ 1.1k • written 20 months ago by
mario.keller.1988
▴ 20
4
votes
6
replies
1.3k
views
recount 3 protect read length metadata
recountWorkflow
recount3
updated 22 months ago by
Leonardo Collado Torres
★ 1.1k • written 23 months ago by
soever
▴ 20
1
vote
1
reply
967
views
searching study metadata in recount3
recount3
updated 2.1 years ago by
Leonardo Collado Torres
★ 1.1k • written 2.1 years ago by
andrew.su
▴ 10
0
votes
1
reply
971
views
recount3 transform_counts vs compute_read_counts
recount3
updated 2.2 years ago by
Leonardo Collado Torres
★ 1.1k • written 2.2 years ago by
fdelillo
• 0
2
votes
2
replies
2.4k
views
Create TPM gene tables/dataframe from ReCount3
recount3
TCGA
GTEx
DESeq2
2.5 years ago
David
▴ 20
10
votes
11
replies
3.1k
views
Counts from recount3 for DESeq2 analysis
recount3
DESeq2
updated 2.2 years ago by
Leonardo Collado Torres
★ 1.1k • written 2.6 years ago by
william.benit
▴ 10
0
votes
2
replies
1.2k
views
Missing sample in recount3 data
recount3
2.7 years ago • updated 2.6 years ago
alex.dietrich
• 0
0
votes
1
reply
1.1k
views
Retrieve the read counts per transcript instead of per gene
recount3
updated 2.6 years ago by
Leonardo Collado Torres
★ 1.1k • written 2.7 years ago by
oligoelemento
▴ 10
11
votes
8
replies
2.5k
views
Error when downloading data with recount3.
recount3
updated 2.6 years ago by
chris.wilks
▴ 70 • written 4.1 years ago by
Zach Brehm
▴ 20
1
vote
1
reply
1.4k
views
recount3 - download bigwig files for TCGA data
recount3
recount
TCGA
updated 2.6 years ago by
Leonardo Collado Torres
★ 1.1k • written 2.6 years ago by
Xuebing
▴ 10
0
votes
1
reply
773
views
Sample tissue annotation
recount3
updated 2.7 years ago by
Leonardo Collado Torres
★ 1.1k • written 2.8 years ago by
M.M.M.M.
• 0
0
votes
1
reply
1.0k
views
Distinguishing between single cell and bulk data in recount3 study explorer
recount3
updated 2.7 years ago by
Leonardo Collado Torres
★ 1.1k • written 2.9 years ago by
kstachelek
• 0
0
votes
2
replies
2.0k
views
Get read counts for TCGA samples via recount3
recount3
3.0 years ago
mario.keller.1988
▴ 20
2
votes
2
replies
1.5k
views
[recount3] Merge gene counts tables from multiple projects (SRP)
recount3
recountWorkflow
updated 3.1 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.1 years ago by
António Miguel de Jesus Domingues
▴ 510
0
votes
1
reply
998
views
Different read support for splice junctions using snapcount and recount3
recount3
snapcount
updated 3.1 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.1 years ago by
mario.keller.1988
▴ 20
2
votes
5
replies
1.6k
views
Downloading count matrix for full recount3 dataset
recount3
updated 8 months ago by
Leonardo Collado Torres
★ 1.1k • written 3.4 years ago by
Ben
• 0
0
votes
2
replies
1.3k
views
recount3: advice for working with an unannotated genes
recount3
updated 3.0 years ago by
devorah.fialkoff
• 0 • written 3.5 years ago by
MakeTheBrain
• 0
1
vote
1
reply
1.9k
views
Correlation analyses on TCGA data
RNA-seq
Normalization
edgeR
recount3
updated 3.5 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.5 years ago by
mario.keller.1988
▴ 20
0
votes
1
reply
1.4k
views
Using recount data to calculate Intron retention
snapcount
recount3
recount
updated 3.6 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.6 years ago by
Mariela Cortés López
• 0
33 results • Page
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Answer: Unlocking Potential: NURS FPX Strategies and Insights
by
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• 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
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Comment: Is it recommended to analyze different tissues together when using edgeR
by
Gordon Smyth
51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data
by
Melisa Tecik
• 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data
by
James W. MacDonald
67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
Votes
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
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Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
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