Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
recount3
•
reset
0
votes
3
replies
594
views
Merging multi-fastq samples in recount3
recount3
written 6 months ago by
Charlotte Capitanchik
• 0
0
votes
4
replies
1.0k
views
Recount3: PCR duplicates
pcrduplicates
recount3
multimappingreads
updated 6 months ago by
ATpoint
★ 4.7k • written 20 months ago by
seline.natalie
• 0
0
votes
1
reply
613
views
Recount3 error downloading data
recount3
recount
updated 8 months ago by
Leonardo Collado Torres
★ 1.1k • written 12 months ago by
Max Bone
• 0
4
votes
3
replies
745
views
recount3 problem downloading data from source sra
recount3
updated 9 months ago by
Leonardo Collado Torres
★ 1.1k • written 9 months ago by
PABLO ANTONIO
▴ 10
1
vote
1
reply
598
views
Transcript level expression for CCLE
recount3
recount
CCLE
updated 12 months ago by
Leonardo Collado Torres
★ 1.1k • written 12 months ago by
António Miguel de Jesus Domingues
▴ 510
0
votes
2
replies
958
views
TCGA counts to TPM from recount3 do not seem to right
recount3
TCGA
RNASeq
updated 15 months ago by
Leonardo Collado Torres
★ 1.1k • written 16 months ago by
tangming2005
▴ 200
0
votes
2
replies
986
views
recount3 monorail pipeline version
recount3
16 months ago • updated 14 months ago
Lorenzo
• 0
0
votes
3
replies
2.1k
views
Recount3 error with default "recount3_url" option
recount3
updated 21 months ago by
Leonardo Collado Torres
★ 1.1k • written 2.2 years ago by
Cornwell, Adam
▴ 110
0
votes
2
replies
1.1k
views
Recount3 data download problem
recount
recount3
updated 21 months ago by
Leonardo Collado Torres
★ 1.1k • written 2.2 years ago by
gamma.jian
▴ 10
2
votes
6
replies
1.7k
views
Unable to load data from duffel.rail
recount
recountWorkflow
recount3
updated 21 months ago by
Leonardo Collado Torres
★ 1.1k • written 2.2 years ago by
Max Bone
• 0
2
votes
11
replies
2.1k
views
Not able to download recount3 data
recount3
updated 21 months ago by
Leonardo Collado Torres
★ 1.1k • written 2.2 years ago by
Niveditha
▴ 20
0
votes
2
replies
1.0k
views
Cannot download data from IDIES links
recount
recountWorkflow
recount3
updated 21 months ago by
Leonardo Collado Torres
★ 1.1k • written 2.2 years ago by
dml
• 0
1
vote
3
replies
1.5k
views
Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
DESeq2
recount
GTEx
TCGA
recount3
updated 21 months ago by
ATpoint
★ 4.7k • written 21 months ago by
David
▴ 20
1
vote
3
replies
976
views
Recount3 data correspond to TCGA data
recount3
updated 24 days ago by
Leonardo Collado Torres
★ 1.1k • written 22 months ago by
kevin lee
• 0
2
votes
3
replies
1.2k
views
BigWig files provided by recount3
recount3
updated 23 months ago by
Leonardo Collado Torres
★ 1.1k • written 23 months ago by
mario.keller.1988
▴ 20
4
votes
6
replies
1.4k
views
recount 3 protect read length metadata
recountWorkflow
recount3
updated 2.1 years ago by
Leonardo Collado Torres
★ 1.1k • written 2.2 years ago by
soever
▴ 20
1
vote
1
reply
1.0k
views
searching study metadata in recount3
recount3
updated 2.3 years ago by
Leonardo Collado Torres
★ 1.1k • written 2.3 years ago by
andrew.su
▴ 10
0
votes
1
reply
1.0k
views
recount3 transform_counts vs compute_read_counts
recount3
updated 2.5 years ago by
Leonardo Collado Torres
★ 1.1k • written 2.5 years ago by
fdelillo
• 0
2
votes
2
replies
2.6k
views
Create TPM gene tables/dataframe from ReCount3
recount3
TCGA
GTEx
DESeq2
2.7 years ago
David
▴ 20
10
votes
11
replies
3.2k
views
Counts from recount3 for DESeq2 analysis
recount3
DESeq2
updated 2.5 years ago by
Leonardo Collado Torres
★ 1.1k • written 2.8 years ago by
william.benit
▴ 10
0
votes
2
replies
1.2k
views
Missing sample in recount3 data
recount3
2.9 years ago • updated 2.8 years ago
alex.dietrich
• 0
0
votes
1
reply
1.2k
views
Retrieve the read counts per transcript instead of per gene
recount3
updated 2.9 years ago by
Leonardo Collado Torres
★ 1.1k • written 2.9 years ago by
oligoelemento
▴ 10
11
votes
8
replies
2.6k
views
Error when downloading data with recount3.
recount3
updated 2.9 years ago by
chris.wilks
▴ 70 • written 4.3 years ago by
Zach Brehm
▴ 20
1
vote
1
reply
1.6k
views
recount3 - download bigwig files for TCGA data
recount3
recount
TCGA
updated 2.9 years ago by
Leonardo Collado Torres
★ 1.1k • written 2.9 years ago by
Xuebing
▴ 10
0
votes
1
reply
810
views
Sample tissue annotation
recount3
updated 3.0 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.1 years ago by
M.M.M.M.
• 0
0
votes
1
reply
1.1k
views
Distinguishing between single cell and bulk data in recount3 study explorer
recount3
updated 3.0 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.2 years ago by
kstachelek
• 0
0
votes
2
replies
2.2k
views
Get read counts for TCGA samples via recount3
recount3
3.3 years ago • updated 3.2 years ago
mario.keller.1988
▴ 20
2
votes
2
replies
1.6k
views
[recount3] Merge gene counts tables from multiple projects (SRP)
recount3
recountWorkflow
updated 3.3 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.4 years ago by
António Miguel de Jesus Domingues
▴ 510
0
votes
1
reply
1.1k
views
Different read support for splice junctions using snapcount and recount3
recount3
snapcount
updated 3.3 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.4 years ago by
mario.keller.1988
▴ 20
2
votes
5
replies
1.7k
views
Downloading count matrix for full recount3 dataset
recount3
updated 11 months ago by
Leonardo Collado Torres
★ 1.1k • written 3.6 years ago by
Ben
• 0
0
votes
2
replies
1.4k
views
recount3: advice for working with an unannotated genes
recount3
updated 3.2 years ago by
devorah.fialkoff
• 0 • written 3.7 years ago by
MakeTheBrain
• 0
1
vote
1
reply
2.0k
views
Correlation analyses on TCGA data
RNA-seq
Normalization
edgeR
recount3
updated 3.7 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.7 years ago by
mario.keller.1988
▴ 20
0
votes
1
reply
1.5k
views
Using recount data to calculate Intron retention
snapcount
recount3
recount
updated 3.9 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.9 years ago by
Mariela Cortés López
• 0
33 results • Page
1 of 1
Recent ...
Replies
Answer: Welcome Bonus of USD 999 for free, join today!
by
xihaxiw582
• 0
Hello! If you're looking for online casinos where you can start playing with a small deposit, I recently found a great resource. Check out …
Answer: SingleR with multiple single cell references
by
Aaron Lun
★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies
by
ATpoint
★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads?
by
Gordon Smyth
52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Awards
• All
Popular Question
to
xiaofeiwang198266
• 0
Popular Question
to
maltethodberg
▴ 180
Popular Question
to
abadgerw
• 0
Popular Question
to
Jim Nemesh
▴ 10
Popular Question
to
Wolfgang Huber
★ 13k
Locations
• All
United States,
8 minutes ago
Germany,
15 minutes ago
The city by the bay,
1 hour ago
UPF, Barcelona, Spain,
1 hour ago
Italy,
2 hours ago
Traffic: 1139 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6