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reference
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reset
2
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2
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1.2k
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Tximport missing values for group summarizing counts
tximport
rat
reference
GTF
salmon
4.1 years ago
keremwai
• 0
0
votes
2
replies
1.2k
views
sigh of log2FC values in DESeq2
sign
FoldChange
DESeq2
reference
updated 2.6 years ago by
Michael Love
42k • written 2.6 years ago by
yampolsk
• 0
0
votes
2
replies
1.1k
views
Reference manual for rmr2 package
reference
updated 8.7 years ago by
Aaron Lun
★ 28k • written 8.7 years ago by
Agaz Hussain Wani
▴ 260
0
votes
1
reply
2.2k
views
EdgeR: setting reference condition and design matrix headers
edgeR
reference
design matrix
multiple factor design
updated 9.1 years ago by
Aaron Lun
★ 28k • written 9.1 years ago by
Ekarl2
▴ 80
3
votes
3
replies
2.0k
views
EnsDb.Rnorvegicus for Rnor6
annotation
db
reference
rnor6
updated 4.1 years ago by
Guido Hooiveld
★ 4.0k • written 4.1 years ago by
keremwai
• 0
0
votes
0
replies
860
views
Reference for minimum number of probes commonly used for segmentation of microarray data
segmentation
reference
CNA
TCGA
5.5 years ago
jlarsen728
• 0
0
votes
0
replies
877
views
Setting relevel with the JunctionSeq package
junctionseq
relevel
reference
7.4 years ago
Assa Yeroslaviz
★ 1.5k
7 results • Page
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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42k
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★ 1.1k
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