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roast
•
reset
1
vote
3
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387
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ROAST compare results with complex design
limma
mroast
roast
CAMERA
written 3 months ago by
Jiahao Tian
• 0
3
votes
2
replies
2.0k
views
Self-contained gene set testing with DESeq2 results
roast
DESeq2
GeneSetEnrichment
updated 5.0 years ago by
Gordon Smyth
53k • written 5.0 years ago by
prabin.dm
• 0
2
votes
2
replies
2.6k
views
Finding genes in a gene set detected by ROAST (or FRY) in limma
roast
fry
limma
updated 6.5 years ago by
Gordon Smyth
53k • written 6.5 years ago by
kentfung
▴ 20
4
votes
4
replies
2.0k
views
Interpreting mroast results
mroast
limma
roast
7.1 years ago
SB
• 0
1
vote
4
replies
1.8k
views
Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma
roast
statistics
source code
gene set testing
7.4 years ago • updated 7.3 years ago
Andrea Carenzo
• 0
2
votes
2
replies
2.1k
views
limma roast results not in accordance with barcodeplot
roast
limma
7.6 years ago
b.nota
▴ 370
3
votes
2
replies
1.7k
views
ROAST after edgeR glmTreat and average RPKM filter
roast
edgeR
glmtreat
updated 9.3 years ago by
Aaron Lun
★ 29k • written 9.3 years ago by
b.nota
▴ 370
2
votes
2
replies
1.8k
views
limma roast/mroast with patient-matched pre-/post- treatment
limma
roast
mroast
block
updated 9.5 years ago by
Ryan C. Thompson
★ 7.9k • written 9.5 years ago by
barbara.shih
• 0
2
votes
2
replies
1.7k
views
Running Roast with Gene Symbols of Curated Genes
mroast
roast
gene set
gene set analysis
edgeR
updated 9.6 years ago by
James W. MacDonald
68k • written 9.6 years ago by
lattalic
• 0
0
votes
3
replies
1.9k
views
ROAST using curated gene sets
edgeR
mroast
roast
9.6 years ago
lattalic
• 0
2
votes
1
reply
1.7k
views
limma symbols2indices from gmt files versus rdata files
limma
romer
roast
updated 10.0 years ago by
Gordon Smyth
53k • written 10.0 years ago by
biominer
▴ 10
6
votes
10
replies
2.6k
views
Possible implementation of roast/mroast for testing common DE patterns across two different experiments
gene set testing
roast
mroast
differential gene expression
bioconductor
10.6 years ago
svlachavas
▴ 840
3
votes
4
replies
3.1k
views
edgeR: no replicates & mroast
edger
roast
updated 11.1 years ago by
Gordon Smyth
53k • written 11.1 years ago by
Daniel
▴ 10
4
votes
6
replies
4.6k
views
limma roast syntax and interpretation
limma
roast
updated 11.2 years ago by
Gordon Smyth
53k • written 11.2 years ago by
Juliet Hannah
▴ 360
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Answer: Limma-voom sample weights and impact on DEG numbers
by
Gordon Smyth
53k
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