Bioconductor Rownames

Showing : rownames • reset

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5.1k

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help DESeq2 DESeqDataSetFromMatrix rownames

updated 2.4 years ago by Sanatan • 0 • written 3.6 years ago by dorina.jamniczky • 0

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5.3k

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deseq2 rownames

updated 3.1 years ago by Michael Love 42k • written 4.4 years ago by corellig ▴ 10

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1.2k

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rownames replace characters

updated 4.8 years ago by Gordon Smyth 51k • written 4.8 years ago by ph.shimaasherif • 0

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2.1k

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WGCNA wgcna rownames

updated 7.1 years ago by Peter Langfelder ★ 3.0k • written 7.1 years ago by je.maxfield • 0

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2.4k

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phyloseq merge_samples rownames error

8.1 years ago newmanss • 0

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1.6k

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DEXSeq rownames pre-filtering

updated 8.8 years ago by Wolfgang Huber ★ 13k • written 8.8 years ago by arom2 • 0

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1.2k

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multiple sequences masks rowmask rownames biostrings

updated 8.9 years ago by Valerie Obenchain ★ 6.8k • written 8.9 years ago by ben.ward ▴ 30

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2.6k

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heatmap rownames genes

9.1 years ago johnlee.johnson • 0

8 results • Page 1 of 1

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Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k