Showing : ruuid • reset
0
votes
8
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1.5k
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Ruuid had non-zero exit status
Ruuid Ruuid
updated 17.9 years ago by ★ 7.4k • written 17.9 years ago by ▴ 50
0
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6
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1.4k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 18.9 years ago by ★ 7.4k • written 18.9 years ago by ★ 1.4k
0
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4
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1.9k
views
installation problem
Ruuid genefilter rhdf5 multtest affy graph Rgraphviz RBGL Ruuid genefilter rhdf5 affy
updated 20.6 years ago by 6.7k • written 20.6 years ago by ▴ 30
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4
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1.1k
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Ruuid installation problems
Ruuid Ruuid
19.2 years ago raffaele calogero ▴ 500
0
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3
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1.3k
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package Ruuid
Ruuid Ruuid
19.7 years ago Alberto Goldoni ▴ 360
0
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3
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1.4k
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Recent changes to Bioconductor packages
Microarray Ruuid graph limma EBarrays Microarray Ruuid graph limma EBarrays
20.2 years ago • updated 20.1 years ago madman@jimmy.harvard.edu ▴ 850
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3
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1.3k
views
Recent changes to Bioconductor packages
Biobase Ruuid DynDoc tkWidgets affy graph Rgraphviz AnnBuilder RBGL PROcess Biobase
21.1 years ago • updated 21.0 years ago madman@jimmy.harvard.edu ▴ 850
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3
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1.2k
views
Rgraphviz install issues
Ruuid Rgraphviz Ruuid Rgraphviz
updated 19.6 years ago by ▴ 30 • written 19.6 years ago by ▴ 280
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3
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1.5k
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Can not install Ruuid package in a linux server
Ruuid Ruuid
updated 13.2 years ago by 6.7k • written 13.2 years ago by ▴ 290
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2
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1.5k
views
problem loading affycoretools
Survival hgu95av2 Biobase Ruuid annotate genefilter multtest affydata graph limma gcrma
17.7 years ago Jenny Drnevich ★ 2.2k
0
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2
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1.6k
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Problem installing graph package
Ruuid rhdf5 graph hexbin Rgraphviz Ruuid rhdf5 graph hexbin Rgraphviz
updated 19.5 years ago by ★ 5.5k • written 19.5 years ago by ▴ 50
0
votes
2
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927
views
Ruuid requires specific MAKEFLAGS setting on Fedora Core 2
Ruuid Rgraphviz PROcess Ruuid Rgraphviz PROcess
updated 18.9 years ago by ▴ 80 • written 18.9 years ago by ▴ 70
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2
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1.5k
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GGtools and GGBase installation problems
Infrastructure GUI Ruuid GGtools GGBase Infrastructure GUI Ruuid GGtools GGBase
updated 13.2 years ago by 6.7k • written 13.2 years ago by ▴ 460
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1
reply
1.8k
views
package ‘Ruuid’ is not available (as a binary package for R version 3.1.3)
ruuid biocinstaller
updated 9.0 years ago by ★ 13k • written 9.0 years ago by • 0
0
votes
1
reply
1.7k
views
Rv1.91 or v2.0.0 on MacOS 10.3.5
SAGE GO Kidney hgu95av2 hu6800 rae230a cdf Biobase Ruuid DynDoc annotate edd multtest
updated 19.5 years ago by ★ 5.5k • written 19.5 years ago by ▴ 100
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1
reply
912
views
ReadAffy question
GO Ruuid DynDoc annotate genefilter multtest tkWidgets reposTools affy widgetTools limma
updated 18.3 years ago by 65k • written 18.3 years ago by ▴ 890
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1
reply
1.3k
views
[R] problem loading affycoretools - solved!
Biobase Ruuid genefilter multtest graph limma gcrma matchprobes affyPLM RBGL simpleaffy
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ★ 2.2k
0
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1
reply
989
views
Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X
Cancer Ruuid tkWidgets graph GOstats Cancer Ruuid tkWidgets graph GOstats
updated 16.8 years ago by ▴ 10 • written 16.8 years ago by ★ 7.4k
0
votes
1
reply
1.4k
views
GSEABase error in parsing msigdb_v2.5.xml
GO Infrastructure hgu95av2 Biobase Ruuid AnnotationDbi GO Infrastructure hgu95av2 Biobase
updated 16.0 years ago by 25k • written 16.0 years ago by ▴ 130
0
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1
reply
1.4k
views
Can not invoke Ruuid package in updated Mac OS X
Ruuid Ruuid
updated 13.2 years ago by 6.7k • written 13.2 years ago by ▴ 290
0
votes
0
replies
796
views
Ruuid: Can't install on OSF1
Ruuid Ruuid
19.6 years ago Michael Hoffman ▴ 30
0
votes
0
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880
views
Unable to load Ruuid in R 2.8.1
Ruuid Ruuid
15.3 years ago Daniel Klevebring ▴ 80
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0
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839
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PGSEA and Ruuid
Ruuid PGSEA Ruuid PGSEA
15.3 years ago Daniel Klevebring ▴ 80
0
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0
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1.1k
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blocking in limma gives an estimability problem
GO hgu95av2 Ruuid multtest affy graph limma RBGL qvalue Category affyio GO hgu95av2
17.9 years ago Pedro López Romero ▴ 360
0
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0
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1.3k
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error in loading affy (R 2.0), Thank you
Normalization GO Clustering moe430a moe430b probe Ruuid rhdf5 multtest affy graph limma
19.5 years ago Pintilie, Melania ▴ 50
0
votes
0
replies
913
views
Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X
Ruuid tkWidgets graph GOstats Ruuid tkWidgets graph GOstats
16.8 years ago Michael Parisi ▴ 10
0
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0
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774
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Win32 packages
Ruuid rhdf5 affyPLM RdbiPgSQL Ruuid rhdf5 affyPLM RdbiPgSQL
20.6 years ago Jeff Gentry ★ 3.9k
27 results • Page 1 of 1
Recent ...
Replies
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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