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Showing :
ruuid
•
reset
0
votes
2
replies
1.6k
views
Problem installing graph package
Ruuid
rhdf5
graph
hexbin
Rgraphviz
Ruuid
rhdf5
graph
hexbin
Rgraphviz
updated 19.5 years ago by
rgentleman
★ 5.5k • written 19.5 years ago by
Matt McCall
▴ 50
0
votes
1
reply
1.7k
views
Rv1.91 or v2.0.0 on MacOS 10.3.5
SAGE
GO
Kidney
hgu95av2
hu6800
rae230a
cdf
Biobase
Ruuid
DynDoc
annotate
edd
multtest
updated 19.5 years ago by
rgentleman
★ 5.5k • written 19.5 years ago by
rkakkar@uchicago.edu
▴ 100
0
votes
3
replies
1.3k
views
Recent changes to Bioconductor packages
Biobase
Ruuid
DynDoc
tkWidgets
affy
graph
Rgraphviz
AnnBuilder
RBGL
PROcess
Biobase
21.1 years ago • updated 21.0 years ago
madman@jimmy.harvard.edu
▴ 850
0
votes
0
replies
774
views
Win32 packages
Ruuid
rhdf5
affyPLM
RdbiPgSQL
Ruuid
rhdf5
affyPLM
RdbiPgSQL
20.6 years ago
Jeff Gentry
★ 3.9k
0
votes
4
replies
1.9k
views
installation problem
Ruuid
genefilter
rhdf5
multtest
affy
graph
Rgraphviz
RBGL
Ruuid
genefilter
rhdf5
affy
updated 20.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 20.6 years ago by
Weiming Zhang
▴ 30
0
votes
3
replies
1.4k
views
Recent changes to Bioconductor packages
Microarray
Ruuid
graph
limma
EBarrays
Microarray
Ruuid
graph
limma
EBarrays
20.2 years ago • updated 20.1 years ago
madman@jimmy.harvard.edu
▴ 850
0
votes
3
replies
1.3k
views
package Ruuid
Ruuid
Ruuid
19.7 years ago
Alberto Goldoni
▴ 360
0
votes
3
replies
1.2k
views
Rgraphviz install issues
Ruuid
Rgraphviz
Ruuid
Rgraphviz
updated 19.6 years ago by
Andrew Beckerman
▴ 30 • written 19.6 years ago by
Byron Ellis
▴ 280
0
votes
0
replies
796
views
Ruuid: Can't install on OSF1
Ruuid
Ruuid
19.6 years ago
Michael Hoffman
▴ 30
0
votes
0
replies
1.3k
views
error in loading affy (R 2.0), Thank you
Normalization
GO
Clustering
moe430a
moe430b
probe
Ruuid
rhdf5
multtest
affy
graph
limma
19.5 years ago
Pintilie, Melania
▴ 50
0
votes
4
replies
1.1k
views
Ruuid installation problems
Ruuid
Ruuid
19.2 years ago
raffaele calogero
▴ 500
0
votes
2
replies
927
views
Ruuid requires specific MAKEFLAGS setting on Fedora Core 2
Ruuid
Rgraphviz
PROcess
Ruuid
Rgraphviz
PROcess
updated 18.9 years ago by
Uri David Akavia
▴ 80 • written 18.9 years ago by
Jan T. Kim
▴ 70
0
votes
6
replies
1.4k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO
Survival
hgu95av2
mgu74av2
Ruuid
annotate
multtest
affy
graph
annaffy
RBGL
GOstats
updated 18.9 years ago by
Seth Falcon
★ 7.4k • written 18.9 years ago by
Dick Beyer
★ 1.4k
0
votes
1
reply
912
views
ReadAffy question
GO
Ruuid
DynDoc
annotate
genefilter
multtest
tkWidgets
reposTools
affy
widgetTools
limma
updated 18.3 years ago by
James W. MacDonald
65k • written 18.3 years ago by
Kimpel, Mark W
▴ 890
0
votes
8
replies
1.5k
views
Ruuid had non-zero exit status
Ruuid
Ruuid
updated 17.9 years ago by
Seth Falcon
★ 7.4k • written 17.9 years ago by
zph@herald.ox.ac.uk
▴ 50
0
votes
0
replies
1.1k
views
blocking in limma gives an estimability problem
GO
hgu95av2
Ruuid
multtest
affy
graph
limma
RBGL
qvalue
Category
affyio
GO
hgu95av2
17.9 years ago
Pedro López Romero
▴ 360
0
votes
2
replies
1.5k
views
problem loading affycoretools
Survival
hgu95av2
Biobase
Ruuid
annotate
genefilter
multtest
affydata
graph
limma
gcrma
17.7 years ago
Jenny Drnevich
★ 2.2k
0
votes
1
reply
1.3k
views
[R] problem loading affycoretools - solved!
Biobase
Ruuid
genefilter
multtest
graph
limma
gcrma
matchprobes
affyPLM
RBGL
simpleaffy
updated 17.7 years ago by
Seth Falcon
★ 7.4k • written 17.7 years ago by
Jenny Drnevich
★ 2.2k
0
votes
0
replies
913
views
Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X
Ruuid
tkWidgets
graph
GOstats
Ruuid
tkWidgets
graph
GOstats
16.8 years ago
Michael Parisi
▴ 10
0
votes
1
reply
989
views
Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X
Cancer
Ruuid
tkWidgets
graph
GOstats
Cancer
Ruuid
tkWidgets
graph
GOstats
updated 16.8 years ago by
Alex
▴ 10 • written 16.8 years ago by
Seth Falcon
★ 7.4k
0
votes
1
reply
1.4k
views
GSEABase error in parsing msigdb_v2.5.xml
GO
Infrastructure
hgu95av2
Biobase
Ruuid
AnnotationDbi
GO
Infrastructure
hgu95av2
Biobase
updated 16.0 years ago by
Martin Morgan
25k • written 16.0 years ago by
Vladimir Morozov
▴ 130
0
votes
0
replies
880
views
Unable to load Ruuid in R 2.8.1
Ruuid
Ruuid
15.3 years ago
Daniel Klevebring
▴ 80
0
votes
0
replies
839
views
PGSEA and Ruuid
Ruuid
PGSEA
Ruuid
PGSEA
15.3 years ago
Daniel Klevebring
▴ 80
0
votes
3
replies
1.5k
views
Can not install Ruuid package in a linux server
Ruuid
Ruuid
updated 13.2 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.2 years ago by
Mao Jianfeng
▴ 290
0
votes
1
reply
1.4k
views
Can not invoke Ruuid package in updated Mac OS X
Ruuid
Ruuid
updated 13.2 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.2 years ago by
Mao Jianfeng
▴ 290
0
votes
2
replies
1.5k
views
GGtools and GGBase installation problems
Infrastructure
GUI
Ruuid
GGtools
GGBase
Infrastructure
GUI
Ruuid
GGtools
GGBase
updated 13.2 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.2 years ago by
Neel Aluru
▴ 460
0
votes
1
reply
1.8k
views
package ‘Ruuid’ is not available (as a binary package for R version 3.1.3)
ruuid
biocinstaller
updated 9.0 years ago by
Steve Lianoglou
★ 13k • written 9.0 years ago by
sharon.warner56
• 0
27 results • Page
1 of 1
Recent ...
Replies
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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