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2
votes
2
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How to get the final value of the after an automatic method in SAM
microarray SAM
updated 6.6 years ago by 68k • written 6.6 years ago by ▴ 10
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0
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1.7k
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Question about converting SAM alignment file data to a visual text alignment (e.g., resembling blastn alignment)
SAM samtools pairwisealignment alignment blastn
7.4 years ago ktehmsen • 0
0
votes
5
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3.0k
views
FeatureCounts output to SAM like htseq-counts?
featurecounts SAM htseqcounts
updated 2.5 years ago by ▴ 450 • written 8.6 years ago by • 0
2
votes
2
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2.0k
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SAM/siggenes: Differential gene expression analysis
SAM siggenes microarray gene expression sam
9.0 years ago Brian Smith ▴ 120
1
vote
1
reply
1.8k
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How to get diff expresion results from sam files
differential gene expression sam
updated 9.7 years ago by ★ 29k • written 9.7 years ago by • 0
0
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0
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1.9k
views
DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq splicing python SAM
10.2 years ago Fiona ▴ 70
5
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8
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7.3k
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Getting Aligned DNAStringSet from reference and BAM/SAM file(s)
bam sam alignment biostrings
10.9 years ago ben.ward ▴ 30
2
votes
4
replies
1.7k
views
Interprentation of appropriate statistical test
samr SAM siggenes bioconductor differential gene expression
10.9 years ago svlachavas ▴ 840
0
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3
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1.9k
views
Implementation of SAM statistical technique in R
r SAM bioconductor
updated 11.0 years ago by ★ 3.8k • written 11.0 years ago by ▴ 840
4
votes
4
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3.1k
views
Two-class unpaired test using LIMMA
Limma SAM differential expression
updated 11.1 years ago by 68k • written 11.1 years ago by ▴ 310
10 results • Page 1 of 1
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Comment: Converting Probe IDs to HGNC symbols by Manav ▴ 10
ah thank u so much
Comment: Guitar R package requires update due to dependency GenomicFeatures by Sean Davis 21k
A great way to communicate such a nice troubleshooting and bug fix hint is to file an issue in github: https://github.com/lzcyzm/Guitar/iss…
Answer: Converting Probe IDs to HGNC symbols by Sean Davis 21k
The brainarray annotations are very confusing, as the IDs in the fData look like affymetrix probe IDs. To clarify, the brainarray project m…
Comment: How to do differential expresion across time serise with edgeR? by Gordon Smyth 53k
If you have fake replicates, then I think my code answers your question about how to run the edgeR time-course analysis. Regarding tutoria…
Comment: How to do differential expresion across time serise with edgeR? by petergrahamclark ▴ 10
The use case is kinetic model parameterisation. I'm actually a systems biologist not a bioinformatician. (which is why I'm struggling here)…
Votes
Answer: Converting Probe IDs to HGNC symbols
Converting Probe IDs to HGNC symbols
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?
A: limma-voom duplicateCorrelation once or twice, difference?
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
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