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Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first.
Also take a st…
Answer: Too many significant genes when integrating gtex and tcga
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James W. MacDonald
65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank"
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James W. MacDonald
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You already ran a temporal assay. Now you can compare each time point to the baseline.
The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis
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Aurora
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I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
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arfranco
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But.. How to run a temporal assay?
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