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sce
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reset
2
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5
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5.1k
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Merging multiple single cell experiment objects from different samples
sce
SingleCellExperiment
merge
updated 21 months ago by
mollyab12
• 0 • written 2.6 years ago by
achoppe
▴ 10
1
vote
2
replies
2.2k
views
ident function in sce
SingleCellExperiment
cluster
identities
sce
updated 4.6 years ago by
Aaron Lun
★ 28k • written 4.6 years ago by
reinepapillon
• 0
0
votes
1
reply
1.6k
views
Clearer error messages in SingleCellExperiment cbind
singlecellexperiment
sce
scater
updated 4.6 years ago by
Aaron Lun
★ 28k • written 4.6 years ago by
bharris
• 0
2
votes
4
replies
2.9k
views
Quality control in SingleCellExperiment
SingleCellExperiment
scater
sce
quality control
updated 3.8 years ago by
1498554536
• 0 • written 4.7 years ago by
Linda
• 0
3
votes
3
replies
1.8k
views
Different number of marker genes between same clusters
sce
markers
single cell
DE
clusters
5.2 years ago
ludmi.b
• 0
4
votes
7
replies
5.3k
views
removing rows from SingleCellExperiment container
sce
singlecellexperiment
scRNAseq
subsetting
updated 5.9 years ago by
Aaron Lun
★ 28k • written 5.9 years ago by
TJ
• 0
1
vote
2
replies
1.1k
views
Inserting "Biotype" into scater SCE objects
scater
sce
biotype
R
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
thebadpenny
• 0
0
votes
2
replies
1.2k
views
How to process ids containing "." in BiomaRt?
sce
biomart
annotation
updated 7.4 years ago by
Mike Smith
★ 6.6k • written 7.4 years ago by
linda.c.dansereau
• 0
8 results • Page
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Answer: Deseq2 res Function
by
Michael Love
43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data
by
Gordon Smyth
51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Votes
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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