Bioconductor Sce

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6.4k

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sce SingleCellExperiment merge

updated 2.6 years ago by mollyab12 • 0 • written 3.5 years ago by achoppe ▴ 10

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2.6k

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SingleCellExperiment cluster identities sce

updated 5.5 years ago by Aaron Lun ★ 29k • written 5.5 years ago by reinepapillon • 0

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2.2k

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singlecellexperiment sce scater

updated 5.5 years ago by Aaron Lun ★ 29k • written 5.5 years ago by bharris • 0

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3.5k

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SingleCellExperiment scater sce quality control

updated 4.7 years ago by 1498554536 • 0 • written 5.6 years ago by Linda • 0

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2.5k

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sce markers single cell DE clusters

6.1 years ago ludmi.b • 0

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6.2k

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sce singlecellexperiment scRNAseq subsetting

updated 6.8 years ago by Aaron Lun ★ 29k • written 6.8 years ago by TJ • 0

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1.3k

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scater sce biotype R

updated 7.6 years ago by Aaron Lun ★ 29k • written 7.6 years ago by thebadpenny • 0

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1.4k

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sce biomart annotation

updated 8.3 years ago by Mike Smith ★ 6.6k • written 8.3 years ago by linda.c.dansereau • 0

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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…

Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0

Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…

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DESeq2 for candidate gene analysis

Join BOC Sciences at Drug Discovery Chemistry

Drug datasets for RNA-seq

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

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