Bioconductor Sce

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6.5k

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sce SingleCellExperiment merge

updated 2.8 years ago by mollyab12 • 0 • written 3.7 years ago by achoppe ▴ 10

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2.7k

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SingleCellExperiment cluster identities sce

updated 5.6 years ago by Aaron Lun ★ 29k • written 5.6 years ago by reinepapillon • 0

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2.2k

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singlecellexperiment sce scater

updated 5.6 years ago by Aaron Lun ★ 29k • written 5.6 years ago by bharris • 0

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3.7k

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SingleCellExperiment scater sce quality control

updated 4.9 years ago by 1498554536 • 0 • written 5.8 years ago by Linda • 0

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2.6k

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sce markers single cell DE clusters

6.2 years ago ludmi.b • 0

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6.3k

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sce singlecellexperiment scRNAseq subsetting

updated 7.0 years ago by Aaron Lun ★ 29k • written 7.0 years ago by TJ • 0

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1.3k

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scater sce biotype R

updated 7.8 years ago by Aaron Lun ★ 29k • written 7.8 years ago by thebadpenny • 0

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1.4k

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sce biomart annotation

updated 8.5 years ago by Mike Smith ★ 6.6k • written 8.5 years ago by linda.c.dansereau • 0

8 results • Page 1 of 1

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Answer: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k

The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Popular Question to Istvan Albert ▴ 50

Popular Question to Dario Strbenac ★ 1.6k

Scholar to Nikos Ignatiadis ▴ 180