Showing : snpStats • reset
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Error in ld(): STRING_ELT() can only be applied to a 'character vector', not a 'NULL'
ld() snpStats
3.9 years ago • updated 3.8 years ago Anastasiia • 0
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0
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1.1k
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Extract flanking sequences SNP without reference genome
SNPData snpStats SNP flankingsequences
4.5 years ago Amber • 0
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0
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909
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Coercion of a numeric matrix into a SnpMatrix
snpStats
5.7 years ago schandry • 0
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1
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1.3k
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GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
7.3 years ago GENOMIC_region • 0
1
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1
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1.6k
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reading ped error when using the snpStats library
snpstats ped file R
8.0 years ago kzelaya2 ▴ 10
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1.4k
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snp.rhs.estimates and/or .tests and extracting results
snpStats additive model
8.6 years ago natalie.jean.mcdonald • 0
1
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0
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1.4k
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Error when computing ld with snpStats in big samples
software error snpstats `ld
9.3 years ago carlos.ruiz • 0
1
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1
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2.0k
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Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation DataFrame snpstats
9.9 years ago TimothéeFlutre ▴ 80
1
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2
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2.3k
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Automatic NA values generated by the ld() function of snpStats package
snpStats BioConductor LD Linkage Disequilibrium NA
10.7 years ago remi.tournebize ▴ 10
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1.6k
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snp analysis GWAS
snpstats
updated 10.9 years ago by ★ 13k • written 10.9 years ago by • 0
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2.0k
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(snpStats) Error: Error in terms.formula(formula, special, data = data) : invalid term in model formula
software error snpStats
10.9 years ago vickygarfield87 • 0
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1.3k
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Are the 'trait' and 'phenotype' objects in the snpStats snp.rhs.estimates command the same thing?
snpStats
10.9 years ago vickygarfield87 • 0
0
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2.0k
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snpStats reference allele used in genetic associations?
SNP Category snpStats SNP Category snpStats
updated 11.4 years ago by 6.7k • written 11.4 years ago by ★ 13k
0
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3
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2.1k
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Error reading imputed file using snpStats package
SNP snpStats SNP snpStats
updated 11.7 years ago by 6.7k • written 11.7 years ago by ▴ 50
0
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1
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2.0k
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[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
11.8 years ago David Winsemius ▴ 40
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2.3k
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Plink Data for Fst Calculations
snpStats snpStats
11.8 years ago Voke AO ▴ 760
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3
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1.4k
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SNPstats package bug report
snpStats snpStats
11.9 years ago Guest User ★ 13k
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0
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2.2k
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snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
12.0 years ago Stephanie M. Gogarten ▴ 890
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1.4k
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snpStats Fst Implementation
snpStats snpStats
12.1 years ago Voke AO ▴ 760
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1
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1.7k
views
col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 12.6 years ago by 6.7k • written 12.6 years ago by ▴ 10
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1
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1.6k
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snpStats --- MAF in Pedigrees
snpStats snpStats
updated 12.7 years ago by 6.7k • written 12.7 years ago by ▴ 60
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0
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1.2k
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statistics from snpStats objects
SNP snpStats SNP snpStats
13.3 years ago james power ▴ 10
0
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3
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3.5k
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GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 13.4 years ago by 6.7k • written 13.4 years ago by ▴ 20
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4
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2.0k
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snpStats, read.long, alleles in two columns
SNP Genetics snpStats SNP Genetics snpStats
updated 13.6 years ago by ▴ 20 • written 13.6 years ago by ▴ 30
0
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2
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1.8k
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Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
snpStats snpStats
updated 14.0 years ago by 25k • written 14.0 years ago by ★ 4.2k
25 results • Page 1 of 1
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Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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