Showing : snpStats • reset
1
vote
2
replies
1.5k
views
Error in ld(): STRING_ELT() can only be applied to a 'character vector', not a 'NULL'
ld() snpStats
3.1 years ago • updated 3.0 years ago Anastasiia • 0
0
votes
0
replies
881
views
Extract flanking sequences SNP without reference genome
SNPData snpStats SNP flankingsequences
3.7 years ago Amber • 0
0
votes
0
replies
749
views
Coercion of a numeric matrix into a SnpMatrix
snpStats
4.9 years ago schandry • 0
0
votes
1
reply
1.1k
views
GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
6.5 years ago GENOMIC_region • 0
1
vote
1
reply
1.4k
views
reading ped error when using the snpStats library
snpstats ped file R
7.2 years ago kzelaya2 ▴ 10
0
votes
0
replies
1.2k
views
snp.rhs.estimates and/or .tests and extracting results
snpStats additive model
7.8 years ago natalie.jean.mcdonald • 0
1
vote
0
replies
1.3k
views
Error when computing ld with snpStats in big samples
software error snpstats `ld
8.5 years ago carlos.ruiz • 0
1
vote
1
reply
1.8k
views
Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation DataFrame snpstats
9.1 years ago TimothéeFlutre ▴ 80
1
vote
2
replies
2.1k
views
Automatic NA values generated by the ld() function of snpStats package
snpStats BioConductor LD Linkage Disequilibrium NA
9.9 years ago remi.tournebize ▴ 10
0
votes
1
reply
1.4k
views
snp analysis GWAS
snpstats
updated 10.1 years ago by ★ 13k • written 10.1 years ago by • 0
0
votes
0
replies
1.8k
views
(snpStats) Error: Error in terms.formula(formula, special, data = data) : invalid term in model formula
software error snpStats
10.1 years ago vickygarfield87 • 0
0
votes
0
replies
1.1k
views
Are the 'trait' and 'phenotype' objects in the snpStats snp.rhs.estimates command the same thing?
snpStats
10.1 years ago vickygarfield87 • 0
0
votes
1
reply
1.8k
views
snpStats reference allele used in genetic associations?
SNP Category snpStats SNP Category snpStats
updated 10.6 years ago by 6.7k • written 10.6 years ago by ★ 13k
0
votes
3
replies
1.8k
views
Error reading imputed file using snpStats package
SNP snpStats SNP snpStats
updated 10.9 years ago by 6.7k • written 10.9 years ago by ▴ 50
0
votes
1
reply
1.8k
views
[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
11.0 years ago David Winsemius ▴ 40
0
votes
0
replies
2.2k
views
Plink Data for Fst Calculations
snpStats snpStats
11.0 years ago Voke AO ▴ 760
0
votes
3
replies
1.3k
views
SNPstats package bug report
snpStats snpStats
11.1 years ago Guest User ★ 13k
0
votes
0
replies
2.0k
views
snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
11.2 years ago Stephanie M. Gogarten ▴ 870
0
votes
0
replies
1.2k
views
snpStats Fst Implementation
snpStats snpStats
11.3 years ago Voke AO ▴ 760
0
votes
1
reply
1.5k
views
col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 11.8 years ago by 6.7k • written 11.8 years ago by ▴ 10
0
votes
1
reply
1.4k
views
snpStats --- MAF in Pedigrees
snpStats snpStats
updated 11.9 years ago by 6.7k • written 11.9 years ago by ▴ 60
0
votes
0
replies
1.1k
views
statistics from snpStats objects
SNP snpStats SNP snpStats
12.5 years ago james power ▴ 10
0
votes
3
replies
3.1k
views
GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 12.6 years ago by 6.7k • written 12.6 years ago by ▴ 20
0
votes
4
replies
1.8k
views
snpStats, read.long, alleles in two columns
SNP Genetics snpStats SNP Genetics snpStats
updated 12.8 years ago by ▴ 20 • written 12.8 years ago by ▴ 30
0
votes
2
replies
1.6k
views
Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
snpStats snpStats
updated 13.2 years ago by 25k • written 13.2 years ago by ★ 4.2k
25 results • Page 1 of 1
Recent ...
Replies
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
Awards • All
Popular Question to Ali Barry ▴ 40
Popular Question to gabriel.hoffman ▴ 170
Popular Question to Jenny Drnevich ★ 2.0k
Popular Question to martin.grigorov ▴ 10
Scholar to James W. MacDonald 67k
Locations • All
Germany, 23 minutes ago
The city by the bay, 34 minutes ago
EMBL Heidelberg, 41 minutes ago
UPF, Barcelona, Spain, 42 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
Traffic: 519 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6