Showing : snpStats • reset
1
vote
2
replies
1.5k
views
Error in ld(): STRING_ELT() can only be applied to a 'character vector', not a 'NULL'
ld() snpStats
2.9 years ago Anastasiia • 0
0
votes
0
replies
852
views
Extract flanking sequences SNP without reference genome
SNPData snpStats SNP flankingsequences
3.6 years ago Amber • 0
0
votes
0
replies
724
views
Coercion of a numeric matrix into a SnpMatrix
snpStats
4.8 years ago schandry • 0
0
votes
1
reply
1.1k
views
GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
6.4 years ago GENOMIC_region • 0
1
vote
1
reply
1.4k
views
reading ped error when using the snpStats library
snpstats ped file R
7.0 years ago kzelaya2 ▴ 10
0
votes
0
replies
1.2k
views
snp.rhs.estimates and/or .tests and extracting results
snpStats additive model
7.7 years ago natalie.jean.mcdonald • 0
1
vote
0
replies
1.2k
views
Error when computing ld with snpStats in big samples
software error snpstats `ld
8.4 years ago carlos.ruiz • 0
1
vote
1
reply
1.8k
views
Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation DataFrame snpstats
9.0 years ago TimothéeFlutre ▴ 80
1
vote
2
replies
2.0k
views
Automatic NA values generated by the ld() function of snpStats package
snpStats BioConductor LD Linkage Disequilibrium NA
9.7 years ago remi.tournebize ▴ 10
0
votes
1
reply
1.4k
views
snp analysis GWAS
snpstats
updated 10.0 years ago by ★ 13k • written 10.0 years ago by • 0
0
votes
0
replies
1.8k
views
(snpStats) Error: Error in terms.formula(formula, special, data = data) : invalid term in model formula
software error snpStats
10.0 years ago vickygarfield87 • 0
0
votes
0
replies
1.1k
views
Are the 'trait' and 'phenotype' objects in the snpStats snp.rhs.estimates command the same thing?
snpStats
10.0 years ago vickygarfield87 • 0
0
votes
1
reply
1.8k
views
snpStats reference allele used in genetic associations?
SNP Category snpStats SNP Category snpStats
updated 10.5 years ago by 6.7k • written 10.5 years ago by ★ 13k
0
votes
3
replies
1.8k
views
Error reading imputed file using snpStats package
SNP snpStats SNP snpStats
updated 10.8 years ago by 6.7k • written 10.8 years ago by ▴ 50
0
votes
1
reply
1.7k
views
[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
10.9 years ago David Winsemius ▴ 40
0
votes
0
replies
2.1k
views
Plink Data for Fst Calculations
snpStats snpStats
10.9 years ago Voke AO ▴ 760
0
votes
3
replies
1.3k
views
SNPstats package bug report
snpStats snpStats
10.9 years ago Guest User ★ 13k
0
votes
0
replies
2.0k
views
snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
11.1 years ago Stephanie M. Gogarten ▴ 870
0
votes
0
replies
1.2k
views
snpStats Fst Implementation
snpStats snpStats
11.2 years ago Voke AO ▴ 760
0
votes
1
reply
1.5k
views
col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 11.6 years ago by 6.7k • written 11.6 years ago by ▴ 10
0
votes
1
reply
1.4k
views
snpStats --- MAF in Pedigrees
snpStats snpStats
updated 11.8 years ago by 6.7k • written 11.8 years ago by ▴ 60
0
votes
0
replies
1.1k
views
statistics from snpStats objects
SNP snpStats SNP snpStats
12.4 years ago james power ▴ 10
0
votes
3
replies
3.0k
views
GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 12.4 years ago by 6.7k • written 12.4 years ago by ▴ 20
0
votes
4
replies
1.7k
views
snpStats, read.long, alleles in two columns
SNP Genetics snpStats SNP Genetics snpStats
updated 12.7 years ago by ▴ 20 • written 12.7 years ago by ▴ 30
0
votes
2
replies
1.6k
views
Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
snpStats snpStats
updated 13.1 years ago by 25k • written 13.1 years ago by ★ 4.2k
25 results • Page 1 of 1
Recent ...
Replies
Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0
Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …
Answer: Annotation for EPICv2 by icecreamlover • 0
Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k
And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k
If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k
I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…
Votes
Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
A: How does edgeR cpm function calculate log(CPM) values?
Answer: DecideTest vs topTAGs in edgeR
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
Awards • All
Popular Question to Denise • 0
Popular Question to Assa Yeroslaviz ★ 1.5k
Popular Question to Gordon Smyth 51k
Popular Question to john • 0
Popular Question to James W. MacDonald 67k
Locations • All
UPF, Barcelona, Spain, 39 minutes ago
United States, 54 minutes ago
Germany, 1 hour ago
WEHI, Melbourne, Australia, 2 hours ago
Australia, 3 hours ago
Traffic: 508 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6