Showing : snpStats • reset
1
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Error in ld(): STRING_ELT() can only be applied to a 'character vector', not a 'NULL'
ld() snpStats
4.0 years ago Anastasiia • 0
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0
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1.1k
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Extract flanking sequences SNP without reference genome
SNPData snpStats SNP flankingsequences
4.7 years ago Amber • 0
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0
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949
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Coercion of a numeric matrix into a SnpMatrix
snpStats
5.9 years ago schandry • 0
0
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1
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1.4k
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GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
7.5 years ago GENOMIC_region • 0
1
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1
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1.6k
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reading ped error when using the snpStats library
snpstats ped file R
8.1 years ago kzelaya2 ▴ 10
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1.4k
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snp.rhs.estimates and/or .tests and extracting results
snpStats additive model
8.8 years ago natalie.jean.mcdonald • 0
1
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0
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1.4k
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Error when computing ld with snpStats in big samples
software error snpstats `ld
9.5 years ago carlos.ruiz • 0
1
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1
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2.0k
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Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation DataFrame snpstats
10.1 years ago TimothéeFlutre ▴ 80
1
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2
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2.4k
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Automatic NA values generated by the ld() function of snpStats package
snpStats BioConductor LD Linkage Disequilibrium NA
10.8 years ago remi.tournebize ▴ 10
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1.6k
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snp analysis GWAS
snpstats
updated 11.1 years ago by ★ 13k • written 11.1 years ago by • 0
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2.0k
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(snpStats) Error: Error in terms.formula(formula, special, data = data) : invalid term in model formula
software error snpStats
11.1 years ago vickygarfield87 • 0
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1.3k
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Are the 'trait' and 'phenotype' objects in the snpStats snp.rhs.estimates command the same thing?
snpStats
11.1 years ago vickygarfield87 • 0
0
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1
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2.1k
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snpStats reference allele used in genetic associations?
SNP Category snpStats SNP Category snpStats
updated 11.6 years ago by 6.7k • written 11.6 years ago by ★ 13k
0
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3
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2.1k
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Error reading imputed file using snpStats package
SNP snpStats SNP snpStats
updated 11.9 years ago by 6.7k • written 11.9 years ago by ▴ 50
0
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1
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2.0k
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[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
12.0 years ago David Winsemius ▴ 40
0
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0
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2.4k
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Plink Data for Fst Calculations
snpStats snpStats
12.0 years ago Voke AO ▴ 760
0
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3
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1.5k
views
SNPstats package bug report
snpStats snpStats
12.0 years ago Guest User ★ 13k
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0
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2.2k
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snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
12.2 years ago Stephanie M. Gogarten ▴ 890
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0
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1.4k
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snpStats Fst Implementation
snpStats snpStats
12.3 years ago Voke AO ▴ 760
0
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1
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1.7k
views
col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 12.7 years ago by 6.7k • written 12.7 years ago by ▴ 10
0
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1
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1.6k
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snpStats --- MAF in Pedigrees
snpStats snpStats
updated 12.9 years ago by 6.7k • written 12.9 years ago by ▴ 60
0
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0
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1.3k
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statistics from snpStats objects
SNP snpStats SNP snpStats
13.5 years ago james power ▴ 10
0
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3
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3.6k
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GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 13.5 years ago by 6.7k • written 13.5 years ago by ▴ 20
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4
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2.1k
views
snpStats, read.long, alleles in two columns
SNP Genetics snpStats SNP Genetics snpStats
updated 13.8 years ago by ▴ 20 • written 13.8 years ago by ▴ 30
0
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2
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1.8k
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Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
snpStats snpStats
updated 14.2 years ago by 25k • written 14.2 years ago by ★ 4.2k
25 results • Page 1 of 1
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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