Showing : snpStats • reset
1
vote
2
replies
1.5k
views
Error in ld(): STRING_ELT() can only be applied to a 'character vector', not a 'NULL'
ld() snpStats
3.0 years ago Anastasiia • 0
0
votes
0
replies
865
views
Extract flanking sequences SNP without reference genome
SNPData snpStats SNP flankingsequences
3.6 years ago Amber • 0
0
votes
0
replies
731
views
Coercion of a numeric matrix into a SnpMatrix
snpStats
4.8 years ago schandry • 0
0
votes
1
reply
1.1k
views
GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
6.4 years ago GENOMIC_region • 0
1
vote
1
reply
1.4k
views
reading ped error when using the snpStats library
snpstats ped file R
7.1 years ago kzelaya2 ▴ 10
0
votes
0
replies
1.2k
views
snp.rhs.estimates and/or .tests and extracting results
snpStats additive model
7.7 years ago natalie.jean.mcdonald • 0
1
vote
0
replies
1.2k
views
Error when computing ld with snpStats in big samples
software error snpstats `ld
8.5 years ago carlos.ruiz • 0
1
vote
1
reply
1.8k
views
Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation DataFrame snpstats
9.0 years ago TimothéeFlutre ▴ 80
1
vote
2
replies
2.1k
views
Automatic NA values generated by the ld() function of snpStats package
snpStats BioConductor LD Linkage Disequilibrium NA
9.8 years ago remi.tournebize ▴ 10
0
votes
1
reply
1.4k
views
snp analysis GWAS
snpstats
updated 10.0 years ago by ★ 13k • written 10.0 years ago by • 0
0
votes
0
replies
1.8k
views
(snpStats) Error: Error in terms.formula(formula, special, data = data) : invalid term in model formula
software error snpStats
10.0 years ago vickygarfield87 • 0
0
votes
0
replies
1.1k
views
Are the 'trait' and 'phenotype' objects in the snpStats snp.rhs.estimates command the same thing?
snpStats
10.0 years ago vickygarfield87 • 0
0
votes
1
reply
1.8k
views
snpStats reference allele used in genetic associations?
SNP Category snpStats SNP Category snpStats
updated 10.5 years ago by 6.7k • written 10.5 years ago by ★ 13k
0
votes
3
replies
1.8k
views
Error reading imputed file using snpStats package
SNP snpStats SNP snpStats
updated 10.8 years ago by 6.7k • written 10.8 years ago by ▴ 50
0
votes
1
reply
1.8k
views
[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
10.9 years ago David Winsemius ▴ 40
0
votes
0
replies
2.2k
views
Plink Data for Fst Calculations
snpStats snpStats
11.0 years ago Voke AO ▴ 760
0
votes
3
replies
1.3k
views
SNPstats package bug report
snpStats snpStats
11.0 years ago Guest User ★ 13k
0
votes
0
replies
2.0k
views
snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
11.1 years ago Stephanie M. Gogarten ▴ 870
0
votes
0
replies
1.2k
views
snpStats Fst Implementation
snpStats snpStats
11.2 years ago Voke AO ▴ 760
0
votes
1
reply
1.5k
views
col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 11.7 years ago by 6.7k • written 11.7 years ago by ▴ 10
0
votes
1
reply
1.4k
views
snpStats --- MAF in Pedigrees
snpStats snpStats
updated 11.9 years ago by 6.7k • written 11.9 years ago by ▴ 60
0
votes
0
replies
1.1k
views
statistics from snpStats objects
SNP snpStats SNP snpStats
12.5 years ago james power ▴ 10
0
votes
3
replies
3.0k
views
GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 12.5 years ago by 6.7k • written 12.5 years ago by ▴ 20
0
votes
4
replies
1.8k
views
snpStats, read.long, alleles in two columns
SNP Genetics snpStats SNP Genetics snpStats
updated 12.7 years ago by ▴ 20 • written 12.7 years ago by ▴ 30
0
votes
2
replies
1.6k
views
Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
snpStats snpStats
updated 13.1 years ago by 25k • written 13.1 years ago by ★ 4.2k
25 results • Page 1 of 1
Recent ...
Replies
Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Answer: HilBertVis install error by James W. MacDonald 67k
It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
Votes
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
Awards • All
Popular Question to Talip ▴ 10
Popular Question to alexandre.blais ▴ 50
Popular Question to Fred Hutch (Recruiting) ▴ 40
Scholar to Gordon Smyth 51k
Popular Question to chase.mateusiak • 0
Locations • All
Denmark, 18 minutes ago
WEHI, Melbourne, Australia, 18 minutes ago
United Kingdom, 30 minutes ago
United Kingdom, 57 minutes ago
Seattle, WA, United States, 59 minutes ago
Traffic: 654 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6