Showing : snpStats • reset
1
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2
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Error in ld(): STRING_ELT() can only be applied to a 'character vector', not a 'NULL'
ld() snpStats
3.9 years ago Anastasiia • 0
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0
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1.1k
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Extract flanking sequences SNP without reference genome
SNPData snpStats SNP flankingsequences
4.6 years ago Amber • 0
0
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0
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924
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Coercion of a numeric matrix into a SnpMatrix
snpStats
5.7 years ago schandry • 0
0
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1
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1.3k
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GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
7.3 years ago GENOMIC_region • 0
1
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1
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1.6k
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reading ped error when using the snpStats library
snpstats ped file R
8.0 years ago kzelaya2 ▴ 10
0
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1.4k
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snp.rhs.estimates and/or .tests and extracting results
snpStats additive model
8.7 years ago natalie.jean.mcdonald • 0
1
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0
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1.4k
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Error when computing ld with snpStats in big samples
software error snpstats `ld
9.4 years ago carlos.ruiz • 0
1
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1
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2.0k
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Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation DataFrame snpstats
10.0 years ago TimothéeFlutre ▴ 80
1
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2
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2.4k
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Automatic NA values generated by the ld() function of snpStats package
snpStats BioConductor LD Linkage Disequilibrium NA
10.7 years ago remi.tournebize ▴ 10
0
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1.6k
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snp analysis GWAS
snpstats
updated 11.0 years ago by ★ 13k • written 11.0 years ago by • 0
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2.0k
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(snpStats) Error: Error in terms.formula(formula, special, data = data) : invalid term in model formula
software error snpStats
11.0 years ago vickygarfield87 • 0
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0
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1.3k
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Are the 'trait' and 'phenotype' objects in the snpStats snp.rhs.estimates command the same thing?
snpStats
11.0 years ago vickygarfield87 • 0
0
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1
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2.1k
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snpStats reference allele used in genetic associations?
SNP Category snpStats SNP Category snpStats
updated 11.5 years ago by 6.7k • written 11.5 years ago by ★ 13k
0
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3
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2.1k
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Error reading imputed file using snpStats package
SNP snpStats SNP snpStats
updated 11.8 years ago by 6.7k • written 11.8 years ago by ▴ 50
0
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1
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2.0k
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[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
11.9 years ago David Winsemius ▴ 40
0
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0
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2.3k
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Plink Data for Fst Calculations
snpStats snpStats
11.9 years ago Voke AO ▴ 760
0
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3
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1.5k
views
SNPstats package bug report
snpStats snpStats
11.9 years ago Guest User ★ 13k
0
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0
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2.2k
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snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
12.1 years ago Stephanie M. Gogarten ▴ 890
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0
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1.4k
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snpStats Fst Implementation
snpStats snpStats
12.2 years ago Voke AO ▴ 760
0
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1
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1.7k
views
col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 12.6 years ago by 6.7k • written 12.6 years ago by ▴ 10
0
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1
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1.6k
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snpStats --- MAF in Pedigrees
snpStats snpStats
updated 12.8 years ago by 6.7k • written 12.8 years ago by ▴ 60
0
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0
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1.3k
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statistics from snpStats objects
SNP snpStats SNP snpStats
13.4 years ago james power ▴ 10
0
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3
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3.5k
views
GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 13.4 years ago by 6.7k • written 13.4 years ago by ▴ 20
0
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4
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2.1k
views
snpStats, read.long, alleles in two columns
SNP Genetics snpStats SNP Genetics snpStats
updated 13.7 years ago by ▴ 20 • written 13.7 years ago by ▴ 30
0
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2
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1.8k
views
Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
snpStats snpStats
updated 14.1 years ago by 25k • written 14.1 years ago by ★ 4.2k
25 results • Page 1 of 1
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Comment: After running samtools, the featureCounts command crashed. by eja.gssssse.r.m • 0
The buffer overflow detected error in your featureCount step usually indicates that the program is trying to write more data into memory …
Comment: gene Set with high AUC score but no cells assigned to cell type by eja.gssssse.r.m • 0
It sounds like your AUCell results may be showing high AUC scores without cell assignment due to thresholding or scoring cutoffs. Think of …
Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0
Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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