Showing : snpStats • reset
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Error in ld(): STRING_ELT() can only be applied to a 'character vector', not a 'NULL'
ld() snpStats
3.3 years ago Anastasiia • 0
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0
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948
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Extract flanking sequences SNP without reference genome
SNPData snpStats SNP flankingsequences
4.0 years ago Amber • 0
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0
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803
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Coercion of a numeric matrix into a SnpMatrix
snpStats
5.1 years ago schandry • 0
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1
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1.2k
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GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
6.7 years ago GENOMIC_region • 0
1
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1
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1.5k
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reading ped error when using the snpStats library
snpstats ped file R
7.4 years ago kzelaya2 ▴ 10
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1.3k
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snp.rhs.estimates and/or .tests and extracting results
snpStats additive model
8.1 years ago natalie.jean.mcdonald • 0
1
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0
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1.3k
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Error when computing ld with snpStats in big samples
software error snpstats `ld
8.8 years ago carlos.ruiz • 0
1
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1
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1.8k
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Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation DataFrame snpstats
9.4 years ago TimothéeFlutre ▴ 80
1
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2
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2.2k
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Automatic NA values generated by the ld() function of snpStats package
snpStats BioConductor LD Linkage Disequilibrium NA
10.1 years ago remi.tournebize ▴ 10
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1.5k
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snp analysis GWAS
snpstats
updated 10.4 years ago by ★ 13k • written 10.4 years ago by • 0
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1.9k
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(snpStats) Error: Error in terms.formula(formula, special, data = data) : invalid term in model formula
software error snpStats
10.4 years ago vickygarfield87 • 0
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1.2k
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Are the 'trait' and 'phenotype' objects in the snpStats snp.rhs.estimates command the same thing?
snpStats
10.4 years ago vickygarfield87 • 0
0
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1
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1.9k
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snpStats reference allele used in genetic associations?
SNP Category snpStats SNP Category snpStats
updated 10.9 years ago by 6.7k • written 10.9 years ago by ★ 13k
0
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3
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1.9k
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Error reading imputed file using snpStats package
SNP snpStats SNP snpStats
updated 11.2 years ago by 6.7k • written 11.2 years ago by ▴ 50
0
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1
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1.8k
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[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
11.3 years ago David Winsemius ▴ 40
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2.2k
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Plink Data for Fst Calculations
snpStats snpStats
11.3 years ago Voke AO ▴ 760
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3
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1.3k
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SNPstats package bug report
snpStats snpStats
11.3 years ago Guest User ★ 13k
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0
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2.1k
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snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
11.5 years ago Stephanie M. Gogarten ▴ 890
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1.3k
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snpStats Fst Implementation
snpStats snpStats
11.6 years ago Voke AO ▴ 760
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1
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1.6k
views
col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 12.0 years ago by 6.7k • written 12.0 years ago by ▴ 10
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1
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1.5k
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snpStats --- MAF in Pedigrees
snpStats snpStats
updated 12.2 years ago by 6.7k • written 12.2 years ago by ▴ 60
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0
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1.2k
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statistics from snpStats objects
SNP snpStats SNP snpStats
12.8 years ago james power ▴ 10
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3
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3.3k
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GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 12.8 years ago by 6.7k • written 12.8 years ago by ▴ 20
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4
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1.9k
views
snpStats, read.long, alleles in two columns
SNP Genetics snpStats SNP Genetics snpStats
updated 13.1 years ago by ▴ 20 • written 13.1 years ago by ▴ 30
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2
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1.7k
views
Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
snpStats snpStats
updated 13.5 years ago by 25k • written 13.5 years ago by ★ 4.2k
25 results • Page 1 of 1
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Comment: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Arctic • 0
Many thanks for the link to the C++ code. I will see if I can find someone with C++ experience to help me with the code breakdown from her…
Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Aaron Lun ★ 28k
It's calling C++ code, see the relevant function definitions on [GitHub](https://github.com/knncolle/BiocNeighbors/blob/master/src/generics…
Answer: DESeq2 by ATpoint ★ 4.8k
Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …
Comment: Package developing and interoperation with Bioconductor by slizchap • 0
Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.
Comment: Package developing and interoperation with Bioconductor by slizchap • 0
Thank you so much for your answer, very useful!
Votes
Comment: plyranges: find exact GRanges match keeping metadata columns
Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran
Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?
Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin
Comment: ComBat with repeated measures
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