Showing : source • reset
1
vote
9
replies
1.1k
views
Cannot install oligo on Fedora
oligo source Install
7 months ago • updated 6 months ago Guido Hooiveld ★ 4.1k
0
votes
2
replies
733
views
Unable to access Git links.
Source flowCore Repository git
updated 20 months ago by 4.1k • written 20 months ago by • 0
0
votes
5
replies
4.2k
views
source(biocLite.R) leads to this error >>> Peer certificate cannot be authenticated with given CA certificates
biocinstaller installation install source conda
updated 8.4 years ago by 25k • written 8.4 years ago by ▴ 40
1
vote
14
replies
13k
views
Unable to connect from R 3.2.2
biocinstaller source
9.1 years ago michel.renou • 0
2
votes
7
replies
2.1k
views
Bioconductor Installation may be insecure against man-in-the-middle attacks
security http source installation
updated 9.5 years ago by ★ 8.2k • written 9.5 years ago by • 0
4
votes
1
reply
2.6k
views
Get source code for rpkm() function in edgeR
edgeR rpkm source code
updated 9.7 years ago by 25k • written 9.7 years ago by ▴ 10
6 results • Page 1 of 1
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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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