Bioconductor Spikein

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849

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sperm Drosophila_melanogaster ATACSeq Normalization SpikeIn

updated 10 months ago by ATpoint ★ 4.9k • written 10 months ago by Katerina • 0

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602

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SpikeIn DESeq2 Normalization

written 12 months ago by ADopico • 0

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890

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SpikeIn RUVSeq DESeq2 RUV

updated 14 months ago by Michael Love 43k • written 14 months ago by Ειρήνη • 0

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487

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DiffBind Errorinsocketconnection SpikeIn

17 months ago Virangika • 0

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967

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SpikeIn DiffBind

2.5 years ago Weisheng • 0

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4.1k

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DESeq2 SpikeIn Normalization DifferentialExpression

updated 2.6 years ago by ATpoint ★ 4.9k • written 2.6 years ago by kalavattam ▴ 10

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2.8k

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DESeq2 SpikeIn Normalization

updated 16 months ago by maria.soler • 0 • written 2.6 years ago by kalavattam ▴ 10

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2.9k

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DiffBind SpikeIn Normalization ChIP-seq csaw

2.7 years ago spg • 0

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1.3k

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DiffBind ChIPSeq Normalization SpikeIn

3.9 years ago Drew • 0

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1.1k

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SpikeIn SingleCell

4.0 years ago mb1996 • 0

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1.8k

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ChIPSeq SpikeIn edgeR Normalization

4.1 years ago maria.soler • 0

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5.8k

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edgeR SpikeIn RNASeq

updated 23 months ago by Miguel • 0 • written 4.5 years ago by robert.chen • 0

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4.5k

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CUTandRUN edgeR Normalization SpikeIn ChIPSeq

updated 2.8 years ago by Bogdan ▴ 670 • written 4.9 years ago by Hesh ▴ 10

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Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…

Comment: Average biological replicates in RNA-seq by boczniak767 ▴ 740

@atpoint Should I first standardise data and then average replicates?

Comment: 3-factor DESeq2 trime-series analysis by gogeni5529 • 0

Thans you @swbarnes2 for the answer. I can see why trying to include all three parameters might be difficult to interpret. But we're inte…

Comment: 3-factor DESeq2 trime-series analysis by swbarnes2 ★ 1.4k

What does your PCA look like? A lot of times, I find that different cell lines are so different from each other, that they should not be d…

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by yongjie.wang • 0

Thanks for your reply. " normFactors <- exp(-1 * offst(set2)) normFactors <- normFactors / exp(rowMeans(log(normFactors))) normalizat…

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Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

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Popular Question to Assa Yeroslaviz ★ 1.5k