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Spike-in normalization method in ATACseq
sperm Drosophila_melanogaster ATACSeq Normalization SpikeIn
updated 12 months ago by ★ 5.0k • written 12 months ago by • 0
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2
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Analysis of transcription inhibition with DESeq2
SpikeIn DESeq2 Normalization
written 14 months ago by • 0
0
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1
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987
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Problem with spike-ins (ERCC) in DESeq2 analysis after doing RUVg!
SpikeIn RUVSeq DESeq2 RUV
updated 16 months ago by 43k • written 16 months ago by • 0
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524
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Diffbind Error in socketConnection
DiffBind Errorinsocketconnection SpikeIn
19 months ago Virangika • 0
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DiffBind spike-in lib.sizes confusion
SpikeIn DiffBind
2.7 years ago Weisheng • 0
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Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used
DESeq2 SpikeIn Normalization DifferentialExpression
updated 2.8 years ago by ★ 5.0k • written 2.8 years ago by ▴ 10
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How to use spike-in information (sequences from another species) with DESeq2::DESeq()
DESeq2 SpikeIn Normalization
updated 18 months ago by • 0 • written 2.8 years ago by ▴ 10
3
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4
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3.0k
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RiP RLE normalisation using spike-in peaks in DiffBind for ChIP-seq
DiffBind SpikeIn Normalization ChIP-seq csaw
2.9 years ago spg • 0
0
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1.4k
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DiffBind spike-in normalisation with varying amounts of spike-in chromatin
DiffBind ChIPSeq Normalization SpikeIn
4.1 years ago Drew • 0
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1.1k
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Spike-In Cells for Normalization?
SpikeIn SingleCell
4.2 years ago mb1996 • 0
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2
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1.8k
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Using both spike in and TMM normalizations in ChIP-seq samples
ChIPSeq SpikeIn edgeR Normalization
4.3 years ago maria.soler • 0
7
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12
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6.0k
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Using edgeR and a spike-in to calculate absolute abundance
edgeR SpikeIn RNASeq
updated 2.1 years ago by • 0 • written 4.7 years ago by • 0
1
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9
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4.7k
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Spike-in normalization in EdgeR
CUTandRUN edgeR Normalization SpikeIn ChIPSeq
updated 3.0 years ago by ▴ 670 • written 5.0 years ago by ▴ 10
13 results • Page 1 of 1
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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Scholar to James W. MacDonald 68k
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