Showing : spikein • reset
0
votes
1
reply
330
views
Spike-in normalization method in ATACseq
sperm Drosophila_melanogaster ATACSeq Normalization SpikeIn
updated 16 days ago by ★ 4.5k • written 18 days ago by • 0
0
votes
2
replies
330
views
Analysis of transcription inhibition with DESeq2
SpikeIn DESeq2 Normalization
written 3 months ago by • 0
0
votes
1
reply
449
views
Problem with spike-ins (ERCC) in DESeq2 analysis after doing RUVg!
SpikeIn RUVSeq DESeq2 RUV
updated 4 months ago by 42k • written 4 months ago by • 0
0
votes
0
replies
262
views
Diffbind Error in socketConnection
DiffBind Errorinsocketconnection SpikeIn
7 months ago Virangika • 0
1
vote
2
replies
762
views
DiffBind spike-in lib.sizes confusion
SpikeIn DiffBind
20 months ago Weisheng • 0
6
votes
2
replies
2.8k
views
Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used
DESeq2 SpikeIn Normalization DifferentialExpression
updated 21 months ago by ★ 4.5k • written 21 months ago by ▴ 10
0
votes
2
replies
2.1k
views
How to use spike-in information (sequences from another species) with DESeq2::DESeq()
DESeq2 SpikeIn Normalization
updated 6 months ago by • 0 • written 22 months ago by ▴ 10
3
votes
4
replies
2.2k
views
RiP RLE normalisation using spike-in peaks in DiffBind for ChIP-seq
DiffBind SpikeIn Normalization ChIP-seq csaw
23 months ago • updated 22 months ago spg • 0
0
votes
0
replies
1.1k
views
DiffBind spike-in normalisation with varying amounts of spike-in chromatin
DiffBind ChIPSeq Normalization SpikeIn
3.1 years ago Drew • 0
0
votes
0
replies
872
views
Spike-In Cells for Normalization?
SpikeIn SingleCell
3.2 years ago mb1996 • 0
0
votes
2
replies
1.4k
views
Using both spike in and TMM normalizations in ChIP-seq samples
ChIPSeq SpikeIn edgeR Normalization
3.3 years ago maria.soler • 0
7
votes
12
replies
4.6k
views
Using edgeR and a spike-in to calculate absolute abundance
edgeR SpikeIn RNASeq
updated 13 months ago by • 0 • written 3.7 years ago by • 0
1
vote
9
replies
3.6k
views
Spike-in normalization in EdgeR
CUTandRUN edgeR Normalization SpikeIn ChIPSeq
updated 24 months ago by ▴ 670 • written 4.1 years ago by ▴ 10
13 results • Page 1 of 1
Recent ...
Replies
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thank you so much for the clarification. As you said the replicates are the cells from different plates. For instance, both R01C01 and R05C…
Answer: Handling Epic Array Data by James W. MacDonald 67k
You don't need a sample sheet. It is just a simple way to identify the Idat files and possibly include sample information. But you appear t…
Comment: preprocessIllumina error with EPICv2 array by Rakesh • 0
Amazing, thanks for the help!
Answer: Allele frequencies for ALL alleles of one SNP ? by Robert Castelo ★ 3.4k
Hi, the [GenomicScores](https://bioconductor.org/packages/GenomicSCores) package provides supporting infrastructure to create annotation re…
Answer: preprocessIllumina error with EPICv2 array by James W. MacDonald 67k
You shouldn't need to change the annotation, and certainly not like that. You should never need to use the `@` function directly - there ar…
Votes
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: preprocessIllumina error with EPICv2 array
Answer: preprocessIllumina error with EPICv2 array
Answer: UniProt.ws query loading indefinitely
Answer: Package needs internet access
Awards • All
Popular Question to JennyS • 0
Scholar to James W. MacDonald 67k
Popular Question to shepherl 4.1k
Popular Question to Robert Castelo ★ 3.4k
Popular Question to firestar ▴ 20
Locations • All
France, 12 minutes ago
Australia, 18 minutes ago
United States, 28 minutes ago
Australia, 29 minutes ago
Australia, 41 minutes ago
Traffic: 491 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6