Bioconductor Spikein

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366

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sperm Drosophila_melanogaster ATACSeq Normalization SpikeIn

updated 6 weeks ago by ATpoint ★ 4.6k • written 7 weeks ago by Katerina • 0

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356

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SpikeIn DESeq2 Normalization

written 4 months ago by ADopico • 0

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498

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SpikeIn RUVSeq DESeq2 RUV

updated 5 months ago by Michael Love 43k • written 5 months ago by Ειρήνη • 0

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281

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DiffBind Errorinsocketconnection SpikeIn

8 months ago Virangika • 0

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779

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SpikeIn DiffBind

21 months ago Weisheng • 0

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3.0k

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DESeq2 SpikeIn Normalization DifferentialExpression

updated 22 months ago by ATpoint ★ 4.6k • written 22 months ago by kalavattam ▴ 10

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2.2k

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DESeq2 SpikeIn Normalization

updated 7 months ago by maria.soler • 0 • written 23 months ago by kalavattam ▴ 10

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2.3k

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DiffBind SpikeIn Normalization ChIP-seq csaw

2.0 years ago • updated 23 months ago spg • 0

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1.1k

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DiffBind ChIPSeq Normalization SpikeIn

3.2 years ago Drew • 0

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889

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SpikeIn SingleCell

3.3 years ago mb1996 • 0

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1.4k

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ChIPSeq SpikeIn edgeR Normalization

3.4 years ago maria.soler • 0

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4.7k

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edgeR SpikeIn RNASeq

updated 14 months ago by Miguel • 0 • written 3.8 years ago by robert.chen • 0

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3.7k

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CUTandRUN edgeR Normalization SpikeIn ChIPSeq

updated 2.1 years ago by Bogdan ▴ 670 • written 4.1 years ago by Hesh ▴ 10

13 results • Page 1 of 1

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Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Hervé Pagès 16k

> I have requested gDNAx developers for a feature request to turn off seqlevelsStyle(txdb) Yes, that's the right course of action. `seqlev…

Comment: ISO a solution to rank-order introns by transcript by mat149 ▴ 80

Hey, In revisiting this question, the following code works for the '+' strand. I am having issues with demarcating intron rank by transcri…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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