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spikein
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0
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603
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Spike-in normalization method in ATACseq
sperm
Drosophila_melanogaster
ATACSeq
Normalization
SpikeIn
updated 4 months ago by
ATpoint
★ 4.8k • written 4 months ago by
Katerina
• 0
0
votes
2
replies
455
views
Analysis of transcription inhibition with DESeq2
SpikeIn
DESeq2
Normalization
written 7 months ago by
ADopico
• 0
0
votes
1
reply
680
views
Problem with spike-ins (ERCC) in DESeq2 analysis after doing RUVg!
SpikeIn
RUVSeq
DESeq2
RUV
updated 8 months ago by
Michael Love
43k • written 8 months ago by
Ειρήνη
• 0
0
votes
0
replies
357
views
Diffbind Error in socketConnection
DiffBind
Errorinsocketconnection
SpikeIn
11 months ago
Virangika
• 0
1
vote
2
replies
859
views
DiffBind spike-in lib.sizes confusion
SpikeIn
DiffBind
2.1 years ago • updated 2.0 years ago
Weisheng
• 0
6
votes
2
replies
3.6k
views
Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used
DESeq2
SpikeIn
Normalization
DifferentialExpression
updated 2.1 years ago by
ATpoint
★ 4.8k • written 2.1 years ago by
kalavattam
▴ 10
0
votes
2
replies
2.5k
views
How to use spike-in information (sequences from another species) with DESeq2::DESeq()
DESeq2
SpikeIn
Normalization
updated 10 months ago by
maria.soler
• 0 • written 2.2 years ago by
kalavattam
▴ 10
3
votes
4
replies
2.6k
views
RiP RLE normalisation using spike-in peaks in DiffBind for ChIP-seq
DiffBind
SpikeIn
Normalization
ChIP-seq
csaw
2.3 years ago • updated 2.2 years ago
spg
• 0
0
votes
0
replies
1.2k
views
DiffBind spike-in normalisation with varying amounts of spike-in chromatin
DiffBind
ChIPSeq
Normalization
SpikeIn
3.5 years ago
Drew
• 0
0
votes
0
replies
960
views
Spike-In Cells for Normalization?
SpikeIn
SingleCell
3.6 years ago
mb1996
• 0
0
votes
2
replies
1.6k
views
Using both spike in and TMM normalizations in ChIP-seq samples
ChIPSeq
SpikeIn
edgeR
Normalization
3.7 years ago • updated 3.6 years ago
maria.soler
• 0
7
votes
12
replies
5.2k
views
Using edgeR and a spike-in to calculate absolute abundance
edgeR
SpikeIn
RNASeq
updated 18 months ago by
Miguel
• 0 • written 4.1 years ago by
robert.chen
• 0
1
vote
9
replies
4.1k
views
Spike-in normalization in EdgeR
CUTandRUN
edgeR
Normalization
SpikeIn
ChIPSeq
updated 2.3 years ago by
Bogdan
▴ 670 • written 4.4 years ago by
Hesh
▴ 10
13 results • Page
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Comment: Package developing and interoperation with Bioconductor
by
slizchap
• 0
Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.
Comment: Package developing and interoperation with Bioconductor
by
slizchap
• 0
Thank you so much for your answer, very useful!
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files
by
Mike Smith
★ 6.6k
Tricky to try and debug this without some example files to work with. Can you provide the output of `traceback()` called immediately after…
Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows
by
James W. MacDonald
68k
The annotation data that is provided for this array is simply a repackaging of data that we get from Illumina, so any apparent inconsistenc…
Answer: Package developing and interoperation with Bioconductor
by
James W. MacDonald
68k
Ideally you would have S4 methods that dispatch on the incoming data structure, so people could call your main function using a `data.frame…
Votes
Comment: ComBat with repeated measures
Answer: Package developing and interoperation with Bioconductor
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
Answer: Explannation for ROAST results
A: How DiffBind run PCA based on peak data?
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