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spikein
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1.1k
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Spike-in normalization method in ATACseq
sperm
Drosophila_melanogaster
ATACSeq
Normalization
SpikeIn
updated 15 months ago by
ATpoint
★ 5.0k • written 16 months ago by
Katerina
• 0
0
votes
2
replies
763
views
Analysis of transcription inhibition with DESeq2
SpikeIn
DESeq2
Normalization
written 18 months ago by
ADopico
• 0
0
votes
1
reply
1.2k
views
Problem with spike-ins (ERCC) in DESeq2 analysis after doing RUVg!
SpikeIn
RUVSeq
DESeq2
RUV
updated 19 months ago by
Michael Love
43k • written 19 months ago by
Ειρήνη
• 0
0
votes
0
replies
584
views
Diffbind Error in socketConnection
DiffBind
Errorinsocketconnection
SpikeIn
22 months ago
Virangika
• 0
1
vote
2
replies
1.1k
views
DiffBind spike-in lib.sizes confusion
SpikeIn
DiffBind
3.0 years ago
Weisheng
• 0
6
votes
2
replies
4.6k
views
Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used
DESeq2
SpikeIn
Normalization
DifferentialExpression
updated 3.1 years ago by
ATpoint
★ 5.0k • written 3.1 years ago by
kalavattam
▴ 10
0
votes
2
replies
3.2k
views
How to use spike-in information (sequences from another species) with DESeq2::DESeq()
DESeq2
SpikeIn
Normalization
updated 21 months ago by
maria.soler
• 0 • written 3.1 years ago by
kalavattam
▴ 10
3
votes
4
replies
3.4k
views
RiP RLE normalisation using spike-in peaks in DiffBind for ChIP-seq
DiffBind
SpikeIn
Normalization
ChIP-seq
csaw
3.2 years ago • updated 3.1 years ago
spg
• 0
0
votes
0
replies
1.4k
views
DiffBind spike-in normalisation with varying amounts of spike-in chromatin
DiffBind
ChIPSeq
Normalization
SpikeIn
4.4 years ago
Drew
• 0
0
votes
0
replies
1.2k
views
Spike-In Cells for Normalization?
SpikeIn
SingleCell
4.5 years ago
mb1996
• 0
0
votes
2
replies
2.1k
views
Using both spike in and TMM normalizations in ChIP-seq samples
ChIPSeq
SpikeIn
edgeR
Normalization
4.6 years ago • updated 4.5 years ago
maria.soler
• 0
7
votes
12
replies
6.4k
views
Using edgeR and a spike-in to calculate absolute abundance
edgeR
SpikeIn
RNASeq
updated 2.4 years ago by
Miguel
• 0 • written 5.0 years ago by
robert.chen
• 0
1
vote
9
replies
5.3k
views
Spike-in normalization in EdgeR
CUTandRUN
edgeR
Normalization
SpikeIn
ChIPSeq
updated 3.2 years ago by
Bogdan
▴ 670 • written 5.3 years ago by
Hesh
▴ 10
13 results • Page
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Comment: Can sample-level weights be used when analysing GSVA scores in limma?
by
A.Barden
▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
a2a2hd42aa
• 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
strawberry3
• 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
James W. MacDonald
68k
As Robert and ATpoint have mentioned, you need to allow more time to download a large file like this. ``` > options(timeout = 5e5) > l…
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Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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