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splatter
•
reset
5
votes
2
replies
1.7k
views
Accessing normalized counts
splatter
singlecellexperiment
scater
6.1 years ago
luke.zappia
▴ 50
4
votes
2
replies
949
views
Splatter: simulating fold changes for specific genes?
splatter
5.5 years ago
Brian Haas
▴ 90
3
votes
3
replies
2.3k
views
is SCEset fully abandoned in scran?
scran
scater
splatter
normalization
updated 6.6 years ago by
davis
▴ 90 • written 6.6 years ago by
wt215
• 0
2
votes
3
replies
1.3k
views
splatter simulating paths
splatter
single cell
6.1 years ago
nikolaspapadop
▴ 10
1
vote
1
reply
972
views
Any pointers on simulating cell outliers?
splatter
simulation
6.0 years ago
luke.zappia
▴ 50
1
vote
2
replies
844
views
Splatter: which parameters can cause individual variability( expression levels of genes should change across samples)
SingleCellExperiment
splatter
2.5 years ago
Fatima
• 0
0
votes
1
reply
657
views
change values on Differential Expression parameters
splatter
updated 4.6 years ago by
luke.zappia
▴ 50 • written 4.6 years ago by
jp3770
• 0
0
votes
1
reply
733
views
DE analysis packages not detecting Splat DE simulated genes
splatter
updated 3.7 years ago by
luke.zappia
▴ 50 • written 3.7 years ago by
olympia.hardy13
• 0
0
votes
2
replies
897
views
I cannot install the splatter on colab
splatter
biocmanager
written 3.2 years ago by
Tianyu
• 0
0
votes
3
replies
2.0k
views
Trouble installing splatter
installation
splatter
7.0 years ago
luke.zappia
▴ 50
0
votes
1
reply
969
views
Splatter (unknown correlation between gene expression level in different cell types)
SingleCellData
splatter
updated 2.0 years ago by
luke.zappia
▴ 50 • written 2.0 years ago by
Fatima
• 0
0
votes
1
reply
919
views
Robustness of Splat cell grouping
splatter
6.9 years ago
luke.zappia
▴ 50
0
votes
1
reply
1.1k
views
Control group size
splatter
6.5 years ago
luke.zappia
▴ 50
0
votes
1
reply
1.1k
views
Splatter: How to simulate cells in different groups and different path at the same time?
splatter
6.5 years ago
luke.zappia
▴ 50
0
votes
1
reply
886
views
Simulating paths returns identical values
splatter
6.1 years ago
luke.zappia
▴ 50
0
votes
5
replies
1.2k
views
How to use Splatter to simulate a known number of DE genes in only two groups of cells ?
splatter
Splatter
updated 5.3 years ago by
luke.zappia
▴ 50 • written 5.3 years ago by
chenxofhit
• 0
16 results • Page
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Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE
by
maria.soler
• 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Answer: Differential gene expression analysis results
by
ATpoint
★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Votes
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
Comment: deseq2 results
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