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News: Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
Carpentries Community Teaching Bioconductor
15 months ago Maria Doyle ▴ 110
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News: Bioconductor Carpentries instructor training
teaching Carpentries
3.2 years ago Maria Doyle ▴ 110
13
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3
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News: Bioconductor teaching week
teaching Carpentries
written 3.4 years ago by 1.6k
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Job: Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
computational teaching statistics research
3.5 years ago Andy Lynch ▴ 120
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Job: Bioconductor Community Manager
Community Teaching Bioconductor
3.7 years ago • updated 3.6 years ago Matthew Ritchie ▴ 1000
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Job: Research software engineer at the de Duve Institute, UCLouvain (Brussels, Belgium)
software engineer job teaching bioconductor Job
7.3 years ago Laurent Gatto 1.6k
8
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EdgeR: Explaning dispersion types to newbies
edger dispersion estimatedispersions visualization teaching
updated 7.6 years ago by ★ 29k • written 7.6 years ago by ▴ 20
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News: New Master of Science in Quantitative and Computational Biology at University of Trento, Italy
computational biology bioinformatics teaching master News
updated 9.5 years ago by • 0 • written 9.6 years ago by ▴ 10
5
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News: Bioconductor-related papers -- special F1000Research collection for Bioc2016
publication workflows benchmark teaching News
updated 9.8 years ago by ▴ 10 • written 9.8 years ago by ★ 13k
9 results • Page 1 of 1
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Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
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A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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