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News:
Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
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Community
Teaching
Bioconductor
13 months ago
Maria Doyle
▴ 100
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957
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News:
Bioconductor Carpentries instructor training
teaching
Carpentries
3.0 years ago
Maria Doyle
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13
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Bioconductor teaching week
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written 3.2 years ago by
Laurent Gatto
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Job:
Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
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3.2 years ago
Andy Lynch
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Bioconductor
3.4 years ago
Matthew Ritchie
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Job:
Research software engineer at the de Duve Institute, UCLouvain (Brussels, Belgium)
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Job
7.0 years ago
Laurent Gatto
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8
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12
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12k
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EdgeR: Explaning dispersion types to newbies
edger
dispersion
estimatedispersions
visualization
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updated 7.3 years ago by
Aaron Lun
★ 29k • written 7.3 years ago by
Mr.RB
▴ 20
1
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1
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2.3k
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News:
New Master of Science in Quantitative and Computational Biology at University of Trento, Italy
computational biology
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updated 9.3 years ago by
Chloe2013025
• 0 • written 9.3 years ago by
enridomenici
▴ 10
5
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4.0k
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News:
Bioconductor-related papers -- special F1000Research collection for Bioc2016
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updated 9.6 years ago by
thomas.ingraham
▴ 10 • written 9.6 years ago by
Wolfgang Huber
★ 13k
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
by
teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
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DESeq2 for candidate gene analysis
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
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