Showing : time course • reset
3
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5
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Is it capable to analysis the unbalanced time course experiment by DESeq2?
time course deseq2
updated 3.6 years ago by 42k • written 3.6 years ago by • 0
3
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2
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2.2k
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DESeq2 time course model
deseq2 time series time course
updated 3.7 years ago by 42k • written 3.7 years ago by ▴ 10
0
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2
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975
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Design of time-course experiment in DESeq2
deseq2 design design formula time course lrt
updated 4.3 years ago by 42k • written 4.3 years ago by • 0
0
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3
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828
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Analysis strategy - possible to use naive control group as t=0 for two treatment groups?
Deseq2 design time course basal group
updated 4.8 years ago by 42k • written 4.8 years ago by • 0
0
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15
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2.7k
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DESeq2 Time Series and "control" condition
deseq2 time course
5.6 years ago sum732 • 0
0
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1
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3.9k
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DESeq2 - How to study time course experiment taking subject variability into account?
deseq2 repeated measures time course
updated 6.3 years ago by 42k • written 6.3 years ago by • 0
0
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0
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979
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Could an experienced user of Polyester help me with some questions?
rna-seq polyester simulation time course
6.4 years ago fa.gholizadeh89 • 0
7
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2
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3.2k
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Incorporating RUVSeq factors of unwanted variation in DESeq2 time course analysis
deseq2 ruvseq spike-in time course time series
updated 6.4 years ago by ▴ 950 • written 6.4 years ago by ▴ 20
0
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9
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1.8k
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limma- time course multiple treatments
limma time course
6.5 years ago • updated 6.4 years ago harelarik ▴ 60
1
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3
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1.1k
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Matrix is not full rank with Multifactorial Experiment and Time course
deseq2 multiple factor design model.matrix time course
updated 6.5 years ago by 42k • written 6.5 years ago by • 0
5
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27
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3.8k
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DESeq2 model - How to test case/control time course model when taking account within sample variability?
deseq2 multiple time points time course casecontrol model design
updated 3.4 years ago by 42k • written 6.8 years ago by ▴ 10
2
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5
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3.2k
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deseq2 multifactor timeseries help
deseq2 multifactorial design time course
updated 7.0 years ago by • 0 • written 7.0 years ago by ▴ 10
0
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3
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1.3k
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About experimental design of RNA-seq
time course block batch effect WGCNA
updated 7.1 years ago by 42k • written 7.1 years ago by • 0
0
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1
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1.6k
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intra-sample time series comparison using DESeq2
deseq2 time course rnaseq design contrast
updated 7.1 years ago by 42k • written 7.2 years ago by • 0
2
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1
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2.0k
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edgeR: time series analysis
edger time course
updated 7.2 years ago by 50k • written 7.2 years ago by ▴ 80
2
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3
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3.3k
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Analysis of RNA-seq time series with edgeR
edger rna-seq differential expression timecourse time course
updated 7.5 years ago by ★ 28k • written 7.5 years ago by • 0
0
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3
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1.6k
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DESeq2 blocking by condition over time
deseq2 phyloseq time course
7.7 years ago akp • 0
0
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3
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2.0k
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DESeq2 time course experiments for multigroups comparison (>2 groups)
DESeq2 Time course RNA-seq
updated 7.9 years ago by 42k • written 7.9 years ago by ▴ 40
0
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5
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1.7k
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What color is assigned in heatmap for time series analysis
deseq2 time course heatmap
updated 7.9 years ago by ▴ 10 • written 7.9 years ago by ▴ 10
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5
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3.3k
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coefficients meaning in time course analysis with DESeq2
deseq2 timecourse time course design and contrast matrix coefficient of variation
updated 8.5 years ago by 42k • written 8.5 years ago by ★ 1.5k
3
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4
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2.7k
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Bioconductor vignette on Time course experiments only describes how to plot the the gene with the smallest p-value. How can I plot specific genes of …
timecourse time course rna-seq deseq2 ggplot2
8.6 years ago moldach ▴ 20
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0
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1.3k
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Limma table results (time course analysis)
limma time course
10.1 years ago • updated 9.5 years ago Gordon Smyth 50k
0
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1
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1.7k
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Limma table results (time course analysis)
limma time course
updated 9.5 years ago by 50k • written 10.1 years ago by ★ 13k
23 results • Page 1 of 1
Recent ...
Replies
Comment: Cannot connect to ExperimentHub server by Jiayu • 0
Many thanks and it also resolved the same issue for me!
Comment: Help with running egsea() by Chris • 0
I tried egsea.ma and got this error: gsa = egsea.ma(numeric_matrix, vector_group, probe_annotation, contrasts = contrast_matrix, gs.an…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by angelathuynh5 • 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Votes
Answer: Cannot connect to ExperimentHub server
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
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