Bioconductor Time-series

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2.8k

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deseq2 time-series design matrix edger

updated 5.2 years ago by Michael Love 41k • written 5.2 years ago by Assa Yeroslaviz ★ 1.5k

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926

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time-series DESeq2 RNASeq timecoursedata TimeCourse

updated 8 months ago by ATpoint ★ 4.1k • written 8 months ago by Debebe • 0

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1.9k

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deseq2 cancer rna-seq time-series

4.8 years ago mah19 • 0

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1.5k

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DESeq2 time-series

updated 6.5 years ago by Michael Love 41k • written 6.5 years ago by gtechbio ▴ 10

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1.3k

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deseq2 timecourse multiple time points time-series

updated 5.8 years ago by Michael Love 41k • written 5.8 years ago by zhangfei-123 • 0

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1.0k

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deseq2 time-series without replicate

updated 5.8 years ago by Michael Love 41k • written 5.8 years ago by bahlv • 0

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787

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time-series mfuzz replace=FALSE

23 months ago soda ▴ 80

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620

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DESeq2 time-series timecoursedata timecourse multifactorial

updated 17 months ago by Michael Love 41k • written 18 months ago by arshad1292 • 0

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823

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half-life DESeq2 time-series

updated 3.1 years ago by Michael Love 41k • written 3.1 years ago by Xianjun Dong ▴ 10

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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k

Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …

Comment: Help with running egsea() by James W. MacDonald 65k

Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…

Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Votes

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

Answer: Trim/Filter out-of-bounds GRanges

Comment: Help with running egsea()

Answer: How to save the DEXSeq results

Awards • All

Scholar to Michael Love 41k

Popular Question to Malcolm Cook ★ 1.6k

Teacher to Gordon Smyth 50k