Showing : time-series • reset
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Time-series RNA-seq analysis using DESeq2
time-series DESeq2 RNASeq timecoursedata TimeCourse
updated 8 months ago by ★ 4.1k • written 8 months ago by • 0
1
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4
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1.3k
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Analysis Time course data using DESeq2
deseq2 timecourse multiple time points time-series
updated 5.8 years ago by 42k • written 5.8 years ago by • 0
0
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3
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1.0k
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time-series, no replicates, no control groupe
deseq2 time-series without replicate
updated 5.8 years ago by 42k • written 5.8 years ago by • 0
2
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10
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2.8k
views
Time-series analysis with DESeq2
deseq2 time-series design matrix edger
updated 5.2 years ago by 42k • written 5.2 years ago by ★ 1.5k
0
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5
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1.9k
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RNA-seq time course analysis with only one experimental condition
deseq2 cancer rna-seq time-series
4.8 years ago mah19 • 0
0
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1
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621
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Interpreting results from DESeq2 time-series multifactorial data analysis
DESeq2 time-series timecoursedata timecourse multifactorial
updated 17 months ago by 42k • written 18 months ago by • 0
0
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1
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825
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DEseq2 to test half-life for time-series data
half-life DESeq2 time-series
updated 3.1 years ago by 42k • written 3.1 years ago by ▴ 10
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5
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1.5k
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Time course DE analysis in DESeq2 with Wald test
DESeq2 time-series
updated 6.5 years ago by 42k • written 6.5 years ago by ▴ 10
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2
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789
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R: problem with running time-series analysis software: Mfuzz
time-series mfuzz replace=FALSE
23 months ago soda ▴ 80
9 results • Page 1 of 1
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Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results by ATpoint ★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Comment: Extremely small p-values using Limma for proteomic data by ATpoint ★ 4.1k
It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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