Bioconductor Timecourse

Showing : timecourse • reset

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2.7k

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limma edger timecourse without replicate voom

written 7.5 years ago by Camila Orellana ▴ 10

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1.4k

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deseq2 timecourse design and contrast matrix

updated 8 weeks ago by ta_awwad ▴ 10 • written 8.5 years ago by Assa Yeroslaviz ★ 1.5k

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1.3k

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Transcriptomics TimeCourse DESeq2

updated 9 months ago by Michael Love 41k • written 10 months ago by smac97 • 0

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925

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time-series DESeq2 RNASeq timecoursedata TimeCourse

updated 8 months ago by ATpoint ★ 4.1k • written 8 months ago by Debebe • 0

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565

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timecourse KEGG DESeq2

updated 11 months ago by Michael Love 41k • written 11 months ago by Fred • 0

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512

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timecoursedata RNASeqData TimeCourse DESeq2

updated 10 months ago by Michael Love 41k • written 10 months ago by georgii.vdovin • 0

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272

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RNASeq DESeq2 timecourse

3 months ago WS • 0

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243

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DESeq2 timecourse time

updated 3 months ago by Michael Love 41k • written 3 months ago by Anastasiia • 0

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172

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DESeq2 timecourse DifferentialExpression

updated 4 weeks ago by James W. MacDonald 65k • written 4 weeks ago by joshua.mannheimer • 0

9 results • Page 1 of 1

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …

Comment: Help with running egsea() by James W. MacDonald 65k

Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…

Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Comment: Help with running egsea() by James W. MacDonald 65k

I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.

Votes

Comment: Help with running egsea()

Answer: Trim/Filter out-of-bounds GRanges

Comment: Help with running egsea()

Answer: How to save the DEXSeq results

Awards • All

Scholar to Michael Love 41k

Popular Question to Malcolm Cook ★ 1.6k

Teacher to Gordon Smyth 50k