Showing : tkWidgets • reset
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Recent changes to Bioconductor packages
MultiChannel tkWidgets affy Rgraphviz MultiChannel tkWidgets affy Rgraphviz
21.2 years ago • updated 21.1 years ago madman@jimmy.harvard.edu ▴ 850
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Getting LimmaGUI to run
tkWidgets widgetTools limmaGUI widgetInvoke tkWidgets widgetTools limmaGUI widgetInvoke
18.8 years ago chris umbricht ▴ 110
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5
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1.6k
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getBioC v1.2.22 & [R] v1.6.2
annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets reposTools affy vsn
updated 21.1 years ago by ★ 3.9k • written 21.1 years ago by ▴ 70
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7
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1.7k
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A question
cdf tkWidgets cdf tkWidgets
updated 22.0 years ago by ▴ 150 • written 22.0 years ago by ▴ 20
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3
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1.3k
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Recent changes to Bioconductor packages
Biobase Ruuid DynDoc tkWidgets affy graph Rgraphviz AnnBuilder RBGL PROcess Biobase
21.1 years ago • updated 21.0 years ago madman@jimmy.harvard.edu ▴ 850
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4
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Enabling the widget option
tkWidgets affy widgetTools tkWidgets affy widgetTools
21.3 years ago Tapan Mehta ▴ 270
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3
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2.3k
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trouble installing "affy" package
Biobase tkWidgets affy Biobase tkWidgets affy
20.3 years ago Jeffrey Chang ▴ 40
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2
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Problems encountered using affy in R
Biobase annotate genefilter multtest ROC tkWidgets affy vsn Biobase annotate genefilter
updated 21.2 years ago by 6.7k • written 21.2 years ago by ▴ 20
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2
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Trouble with affy version 1.2.1
Normalization rhdf5 tkWidgets affy Normalization rhdf5 tkWidgets affy
21.7 years ago Isaac Neuhaus ▴ 360
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12
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1.9k
views
Some Genefilter questions
GO Survival cdf genefilter geneplotter tkWidgets affy affydata widgetTools gcrma affyPLM
updated 17.4 years ago by ★ 5.5k • written 17.4 years ago by ▴ 460
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8
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Reading Agilent files using read.maimages
Survival DynDoc genefilter tkWidgets affy vsn marray convert ArrayExpress Survival affy
updated 16.7 years ago by ▴ 20 • written 16.7 years ago by ▴ 100
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911
views
objNameToList() on some particular list of objects in parent frame
tkWidgets xml kegggraph
updated 7.0 years ago by 65k • written 7.0 years ago by • 0
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1
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Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X
Cancer tkWidgets widgetTools Cancer tkWidgets widgetTools
updated 17.6 years ago by ▴ 150 • written 17.7 years ago by ★ 2.9k
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1
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1.6k
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Problems with url/download and http_proxy
Biobase annotate edd geneplotter tkWidgets ASSIGN Biobase annotate edd geneplotter
updated 21.9 years ago by ▴ 50 • written 21.9 years ago by ▴ 460
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1
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789
views
Cannot load widgetTools package
Biobase tkWidgets reposTools Biobase tkWidgets reposTools
updated 21.1 years ago by 6.7k • written 21.1 years ago by ▴ 10
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5
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1.3k
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Error message when trying to ReadAffy with widgets function: help, please?_Part 2
Cancer tkWidgets Cancer tkWidgets
updated 21.0 years ago by ▴ 360 • written 21.0 years ago by ★ 2.9k
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1
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1.1k
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Problems accessing the Milan package through the vignettes Explorer
Cancer Biobase annotate edd geneplotter multtest tkWidgets affydata vsn graph hexbin
updated 20.9 years ago by ★ 2.9k • written 20.9 years ago by ▴ 130
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1
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Biobase load failed
Biobase genefilter tkWidgets Biobase genefilter tkWidgets
updated 20.6 years ago by 6.7k • written 20.6 years ago by ▴ 10
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1
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1.1k
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Problem with limma2biomaRt and MBNI custom CDF
Annotation GO cdf DynDoc genefilter tkWidgets affy graph limma RBGL biomaRt Category
updated 17.3 years ago by 65k • written 17.3 years ago by ▴ 300
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1
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1.1k
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paired design, LIMMA
cdf tkWidgets affy widgetTools limma affyio cdf tkWidgets affy widgetTools limma affyio
updated 17.0 years ago by ▴ 470 • written 17.0 years ago by 50k
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1
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1.2k
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tcl/tk and biocLite
Genetics Cancer tkWidgets widgetTools marray Genetics Cancer tkWidgets widgetTools marray
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ▴ 30
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1
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989
views
Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X
Cancer Ruuid tkWidgets graph GOstats Cancer Ruuid tkWidgets graph GOstats
updated 16.8 years ago by ▴ 10 • written 16.8 years ago by ★ 7.4k
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1
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1.6k
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create an new AnnotatedDataFrame
Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio Survival
updated 16.8 years ago by 25k • written 16.8 years ago by ▴ 30
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RE : create an new AnnotatedDataFrame
Annotation Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio
updated 16.7 years ago by 25k • written 16.7 years ago by ▴ 30
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2
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ReadAffy widget fails for Annotated DataFrame
Microarray DynDoc tkWidgets affy widgetTools Microarray DynDoc tkWidgets affy widgetTools
updated 16.6 years ago by 25k • written 16.6 years ago by ▴ 140
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2
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Problem with tkWidgets
tkWidgets tkWidgets
updated 12.6 years ago by 65k • written 12.6 years ago by ★ 13k
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2
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2.6k
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[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure Cancer Biobase tkWidgets globaltest BiocInstaller BiocGenerics Cancer
updated 11.1 years ago by 25k • written 11.1 years ago by ▴ 40
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1
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1.0k
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where to get R 1.9.0
tkWidgets affy tkWidgets affy
updated 20.2 years ago by ★ 5.5k • written 20.2 years ago by ▴ 210
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1
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1.0k
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problems with affy & widgets
Pharmacogenomics tkWidgets affy Pharmacogenomics tkWidgets affy
19.4 years ago Edoardo Saccenti ▴ 130
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1
reply
797
views
GOstats/tkWidgets/gcrma conflict
tkWidgets gcrma matchprobes GOstats tkWidgets gcrma matchprobes GOstats
updated 18.5 years ago by 25k • written 18.5 years ago by ▴ 80
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1
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912
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ReadAffy question
GO Ruuid DynDoc annotate genefilter multtest tkWidgets reposTools affy widgetTools limma
updated 18.3 years ago by 65k • written 18.3 years ago by ▴ 890
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3
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widgetTools wFuns problem
DynDoc tkWidgets reposTools widgetTools DynDoc tkWidgets reposTools widgetTools
updated 18.3 years ago by ★ 2.9k • written 18.3 years ago by ▴ 80
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Re: trouble installing "affy" package
Cancer Biobase tkWidgets affy Cancer Biobase tkWidgets affy
20.3 years ago Wolfgang Huber ★ 13k
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0
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913
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Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X
Ruuid tkWidgets graph GOstats Ruuid tkWidgets graph GOstats
16.8 years ago Michael Parisi ▴ 10
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0
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1.0k
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batch vs interactive behavior of reposTools()
Biobase DynDoc tkWidgets widgetTools Biobase DynDoc tkWidgets widgetTools
19.4 years ago Marion Hakanson ▴ 50
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0
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1.5k
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peer review process/DATE CORRECTION
Biobase annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets affy AnnBuilder
22.1 years ago Vincent J. Carey, Jr. 6.7k
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0
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1.2k
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affy packages on Linux doesn't get installed
DynDoc tkWidgets affy affyPLM DynDoc tkWidgets affy affyPLM
20.5 years ago juliab@stat.berkeley.edu ▴ 10
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0
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846
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Re: Bioconductor Digest, Vol 2, Issue 32
cdf Biobase tkWidgets affy GENE.E cdf Biobase tkWidgets affy GENE.E
21.0 years ago Michael McDonald ▴ 30
0
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0
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906
views
tcl/tk dependency of biocLite
Genetics Cancer tkWidgets widgetTools marray Genetics Cancer tkWidgets widgetTools marray
17.0 years ago grischa tödt ▴ 30
0
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0
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1.0k
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Bioconductor web page
GO Cancer tkWidgets reposTools widgetTools simpleaffy affyQCReport affyio GO Cancer
16.9 years ago Seth Falcon ★ 7.4k
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0
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602
views
Re: memory problem with Affy
tkWidgets tkWidgets
21.2 years ago Sylvia Merk ▴ 50
41 results • Page 1 of 1
Recent ...
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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