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topaseq
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Running deprecated packages
ToPASeq
Deprecation
2.7 years ago
pgauthi1
• 0
0
votes
1
reply
863
views
SPIA function error in ToPASeq
topaseq
updated 6.5 years ago by
Gordon Smyth
52k • written 6.5 years ago by
Aditya Saxena
▴ 10
0
votes
0
replies
1.1k
views
SPIA function error in ToPASeq
ToPASeq
SPIA
pathway analysis
R
6.7 years ago
fawazfebin
▴ 60
0
votes
1
reply
1.1k
views
Problem in ToPASeq installation
topaseq
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
Aditya Saxena
▴ 10
0
votes
0
replies
1.8k
views
failed ToPASeq / igraph installation: file present, but not found
installation
package installation
topaseq
igraph
LD_LIBRARY_PATH
7.9 years ago
jan.soderman
• 0
0
votes
1
reply
1.0k
views
Supplying ToPASeq a list of fold changes and their associated p-values
ToPASeq
updated 8.0 years ago by
theobroma22
▴ 10 • written 8.0 years ago by
rubi
▴ 110
1
vote
2
replies
1.5k
views
Normalized count or Count data for ToPASeq package
rnaseq
Topaseq
8.7 years ago
saamar.rajput
• 0
7 results • Page
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Comment: EuroBioC2024 abstract submission is open!
by
Alan Downey
• 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix
by
O'Brien
• 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts
by
O'Brien
• 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Comment: Packages don't update, but no error or warning is thrown
by
neighsanlo
• 0
@[sandtrix][1] This is useful information. [1]: https://sandtrix.io
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
freemanmclaughlin9969289
• 0
Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…
Votes
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
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