Bioconductor Topaseq

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ToPASeq Deprecation

3.4 years ago pgauthi1 • 0

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topaseq

updated 7.3 years ago by Gordon Smyth 53k • written 7.3 years ago by Aditya Saxena ▴ 10

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ToPASeq SPIA pathway analysis R

7.5 years ago fawazfebin ▴ 60

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topaseq

updated 7.9 years ago by Martin Morgan 25k • written 7.9 years ago by Aditya Saxena ▴ 10

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installation package installation topaseq igraph LD_LIBRARY_PATH

8.7 years ago jan.soderman • 0

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1.1k

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ToPASeq

updated 8.7 years ago by theobroma22 ▴ 10 • written 8.7 years ago by rubi ▴ 110

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rnaseq Topaseq

9.4 years ago saamar.rajput • 0

7 results • Page 1 of 1

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Answer: Help with defining groups by Gordon Smyth 53k

Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…

Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760

The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0

Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …