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topaseq
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Running deprecated packages
ToPASeq
Deprecation
3.5 years ago
pgauthi1
• 0
0
votes
1
reply
1.0k
views
SPIA function error in ToPASeq
topaseq
updated 7.3 years ago by
Gordon Smyth
53k • written 7.3 years ago by
Aditya Saxena
▴ 10
0
votes
0
replies
1.3k
views
SPIA function error in ToPASeq
ToPASeq
SPIA
pathway analysis
R
7.6 years ago
fawazfebin
▴ 60
0
votes
1
reply
1.3k
views
Problem in ToPASeq installation
topaseq
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
Aditya Saxena
▴ 10
0
votes
0
replies
1.9k
views
failed ToPASeq / igraph installation: file present, but not found
installation
package installation
topaseq
igraph
LD_LIBRARY_PATH
8.7 years ago
jan.soderman
• 0
0
votes
1
reply
1.1k
views
Supplying ToPASeq a list of fold changes and their associated p-values
ToPASeq
updated 8.8 years ago by
theobroma22
▴ 10 • written 8.8 years ago by
rubi
▴ 110
1
vote
2
replies
1.7k
views
Normalized count or Count data for ToPASeq package
rnaseq
Topaseq
9.5 years ago
saamar.rajput
• 0
7 results • Page
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Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G
by
dzv20413
• 0
Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…
Comment: Memory error while running alignments
by
Erik Wright
▴ 150
How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…
Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
Gabriel
• 0
Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
by
ubjw24
• 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA
by
Rita
• 0
Thank you very much, I appreciate it!
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
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