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topaseq
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0
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704
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Running deprecated packages
ToPASeq
Deprecation
2.0 years ago
pgauthi1
• 0
0
votes
1
reply
708
views
SPIA function error in ToPASeq
topaseq
updated 5.9 years ago by
Gordon Smyth
50k • written 5.9 years ago by
Aditya Saxena
▴ 10
0
votes
0
replies
933
views
SPIA function error in ToPASeq
ToPASeq
SPIA
pathway analysis
R
6.1 years ago
fawazfebin
▴ 60
0
votes
1
reply
923
views
Problem in ToPASeq installation
topaseq
updated 6.5 years ago by
Martin Morgan
25k • written 6.5 years ago by
Aditya Saxena
▴ 10
0
votes
0
replies
1.6k
views
failed ToPASeq / igraph installation: file present, but not found
installation
package installation
topaseq
igraph
LD_LIBRARY_PATH
7.3 years ago
jan.soderman
• 0
0
votes
1
reply
858
views
Supplying ToPASeq a list of fold changes and their associated p-values
ToPASeq
updated 7.3 years ago by
theobroma22
▴ 10 • written 7.3 years ago by
rubi
▴ 110
1
vote
2
replies
1.3k
views
Normalized count or Count data for ToPASeq package
rnaseq
Topaseq
8.0 years ago
saamar.rajput
• 0
7 results • Page
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
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