Showing : transcriptome • reset
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Convert transcriptomic bam to genomic bam?
ensembldb transcriptome genome coordinateconversion
updated 19 months ago by 43k • written 19 months ago by ▴ 10
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1
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890
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Transcriptome assembly: single individual or pooled samples
transcriptome splicing assembly
updated 3.0 years ago by 68k • written 3.0 years ago by ▴ 20
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1.0k
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low mapping between annotated genome and transcriptome
transcriptome Annotation mapping
3.6 years ago Ava • 0
2
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1
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2.0k
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How to know which soft threshold to use for blockwise modules in WGCNA?
wgcna coexpression transcriptome
updated 7.7 years ago by ★ 3.0k • written 7.7 years ago by ▴ 40
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What is the recommended method for running WGCNA on large metatranscriptomic dataset?
wgcna transcriptome big data metagenomics gene expression
7.7 years ago jol.espinoz ▴ 40
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Read Illumina BeadArray control table into Limma
limma microarray transcriptome
updated 9.1 years ago by 53k • written 9.1 years ago by • 0
6 results • Page 1 of 1
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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
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Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
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