Bioconductor Tximport

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203

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tximport edgeR Normalization

7 weeks ago Marianna ▴ 20

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225

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tximport

updated 8 weeks ago by Michael Love 42k • written 8 weeks ago by SG • 0

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278

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DESeq2 tximport

updated 10 weeks ago by ATpoint ★ 4.2k • written 10 weeks ago by hemantcnaik • 0

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1.3k

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STAR tximport RNASeq DESeq2

updated 5 months ago by swbarnes2 ★ 1.4k • written 5 months ago by Bo • 0

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377

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rsem tximport

updated 5 months ago by ATpoint ★ 4.2k • written 5 months ago by apolitics • 0

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597

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tximport DESeq2

updated 6 months ago by James W. MacDonald 66k • written 6 months ago by mckinlee.salazar • 0

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459

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salmon tximport deseq2

updated 7 months ago by Michael Love 42k • written 7 months ago by Kayleigh • 0

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2.0k

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tximport

updated 7 months ago by Abhishek • 0 • written 7 months ago by RLiu ▴ 40

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849

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tximport edgeR

written 9 months ago by Vitor • 0

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1.5k

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tximport DESeq2

updated 8 months ago by Michael Love 42k • written 9 months ago by Christian • 0

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945

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tximport edgeR

updated 9 months ago by Michael Love 42k • written 9 months ago by hanc • 0

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1.6k

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salmon IsoformSwitchAnalyzeR tximport RNASeqData

updated 10 months ago by k.vitting.seerup ▴ 120 • written 10 months ago by elva.gypsophila ▴ 10

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1.2k

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tximport tximportData DESeq2

10 months ago Ndimensional ▴ 20

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696

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tximport tximportData

updated 3 months ago by Matteo • 0 • written 11 months ago by barrypraveen • 0

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1.8k

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salmon edgeR tximport nf-core gene_counts

updated 5 weeks ago by i.atanasoai • 0 • written 15 months ago by mohammedtoufiq91 ▴ 10

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1.4k

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DESeq2 tximport counts Salmon

updated 3 months ago by Michael Love 42k • written 17 months ago by kiqbal • 0

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2.9k

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tximport

updated 10 months ago by Michael Love 42k • written 2.6 years ago by nicolette.sipperly • 0

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3.1k

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tximport dtu salmon TPM rnaseqDTU

written 5.2 years ago by fiona.dick91 ▴ 60

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9.3k

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bioconductor tximport rnaseq R

updated 9 weeks ago by Eva • 0 • written 7.7 years ago by ctl • 0

19 results • Page 1 of 1

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Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2 by BioinfGuru ▴ 30

I would use biomaRt. This is what happens when annotation occurs to early. If possible I would run the DEG analysis on the original output…

Comment: Volcano plot of scRNA-seq data not "centered" by ATpoint ★ 4.2k

My comment was generic. If your experiment causes drastic shifts then the situation might be different. The advise is the same: Try to use …

Comment: conumee with Infinium MethylationEPIC v2.0 by Maximus • 0

Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…

Comment: Volcano plot of scRNA-seq data not "centered" by tjl • 0

Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…

Votes

A: Analyzing data without replicates using DiffBind

DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol

DESeq2 swap ensembl gene id rownames with gene symbol column

A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge

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