Showing : variance • reset
4
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How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 23 months ago by 52k • written 2.0 years ago by ▴ 10
4
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4
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1.3k
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How to ask limma to allow different variances for different treatment arms
limma treatment variance
updated 5.0 years ago by 52k • written 5.0 years ago by ▴ 10
0
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1
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1.1k
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Comparing transcriptome variation across groups after Variance stabilizing transformation using DESeq2
deseq2 vst variance
updated 5.6 years ago by 43k • written 5.6 years ago by • 0
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6
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1.6k
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variancePartition - testing for individuals
variance formula expression
updated 5.9 years ago by ▴ 280 • written 5.9 years ago by ▴ 30
0
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1
reply
1.1k
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Running DESeq2 on top variable genes?
deseq2 variance genes
updated 7.1 years ago by 43k • written 7.1 years ago by ▴ 20
0
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5
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7.2k
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unable to find an inherited method for function counts for signature DESeqTransform
deseq2 counts DESeqtransform variance deviation
updated 7.2 years ago by 43k • written 7.2 years ago by • 0
1
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1
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1.8k
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DESeq2 high variance in differential expression results
deseq2 variance lrt differential gene expression
updated 7.7 years ago by ★ 7.9k • written 7.7 years ago by ▴ 20
3
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2
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2.0k
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How to find genes causing the high variance of one replicate in the PCA
pca variance deseq2 gene_id
updated 8.5 years ago by 43k • written 8.5 years ago by ▴ 10
7
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2
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2.5k
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Appropriate explanation of the methodology behind arrayWeights function from limma R package
limma arrayWeights variance sampleQuality microarray
updated 9.2 years ago by ★ 7.9k • written 9.2 years ago by ▴ 840
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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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