Bioconductor Voom

Showing : voom • reset

vote

replies

2.7k

views

limma edger timecourse without replicate voom

written 7.5 years ago by Camila Orellana ▴ 10

votes

replies

560

views

DEG edgeR limma voom filterByExpr

updated 5 months ago by Gordon Smyth 50k • written 5 months ago by annikagable • 0

votes

replies

609

views

voom RNASeq limma

5 months ago Tyler Sagendorf ▴ 10

vote

replies

1.0k

views

limmaGUI normalization limma voom Normalization

updated 10 months ago by Gordon Smyth 50k • written 10 months ago by manuelsokolov • 0

votes

replies

706

views

voom blocking limma

updated 6 months ago by Gordon Smyth 50k • written 6 months ago by Gerhard Thallinger ▴ 180

votes

replies

164

views

limma RNASeq voom

written 13 days ago by taur.vil • 0

votes

replies

534

views

stats r RNASeqData limma voom

5 months ago pl23 • 0

votes

458

views

RNASeqData limma voom PFS DGE

updated 10 months ago by James W. MacDonald 65k • written 10 months ago by manuelsokolov • 0

vote

986

views

GSEA voom limma

updated 9 months ago by Gordon Smyth 50k • written 10 months ago by manuelsokolov • 0

votes

replies

191

views

Voom Limma WGCNA

4 weeks ago Gimena • 0

votes

replies

805

views

edgeR limma voom RNASeq muscat

updated 5 months ago by Gordon Smyth 50k • written 5 months ago by annikagable • 0

11 results • Page 1 of 1

Recent ...

Replies

Comment: Couldn't connect to server while using "pathways" by ATpoint ★ 4.1k

Please understand that we neither can see your screen, nor read minds. You at least need to provide the line of code and the name of the pa…

Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k

> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of unavailability.…

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

Awards • All

Scholar to ATpoint ★ 4.1k