Showing : widgettools • reset
0
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2
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1.3k
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ReadAffy widget fails for Annotated DataFrame
Microarray DynDoc tkWidgets affy widgetTools Microarray DynDoc tkWidgets affy widgetTools
updated 16.6 years ago by 25k • written 16.6 years ago by ▴ 140
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Bioconductor web page
GO Cancer tkWidgets reposTools widgetTools simpleaffy affyQCReport affyio GO Cancer
16.9 years ago Seth Falcon ★ 7.4k
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1
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1.2k
views
tcl/tk and biocLite
Genetics Cancer tkWidgets widgetTools marray Genetics Cancer tkWidgets widgetTools marray
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ▴ 30
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0
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902
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tcl/tk dependency of biocLite
Genetics Cancer tkWidgets widgetTools marray Genetics Cancer tkWidgets widgetTools marray
17.0 years ago grischa tödt ▴ 30
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6
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1.3k
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install Monograph problem
Cancer widgetTools Cancer widgetTools
17.0 years ago Seth Falcon ★ 7.4k
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1
reply
1.1k
views
paired design, LIMMA
cdf tkWidgets affy widgetTools limma affyio cdf tkWidgets affy widgetTools limma affyio
updated 17.0 years ago by ▴ 470 • written 17.0 years ago by 50k
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0
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1.1k
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marray and limma error with lmFit
Microarray Biobase DynDoc widgetTools limma arrayQuality marray convert Microarray DynDoc
17.0 years ago Paquet, Agnes ▴ 500
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0
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955
views
Memory issues with limma and ImaGen file import
widgetTools limma widgetTools limma
17.3 years ago CV Markus ▴ 10
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10
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1.9k
views
Some Genefilter questions
Normalization Survival Cancer cdf genefilter geneplotter affy affydata widgetTools gcrma
updated 17.4 years ago by ▴ 460 • written 17.4 years ago by ▴ 70
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12
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1.9k
views
Some Genefilter questions
GO Survival cdf genefilter geneplotter tkWidgets affy affydata widgetTools gcrma affyPLM
updated 17.4 years ago by ★ 5.5k • written 17.4 years ago by ▴ 460
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0
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problems reading Illumina files using BeadExplorer
affy widgetTools limma marray convert affyio BeadExplorer affy widgetTools limma marray
17.5 years ago Vitalina Komashko ▴ 10
0
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1
reply
1.3k
views
Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X
Cancer tkWidgets widgetTools Cancer tkWidgets widgetTools
updated 17.6 years ago by ▴ 150 • written 17.6 years ago by ★ 2.9k
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773
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Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X
widgetTools widgetTools
17.6 years ago John E. Cornell, Ph.D. ▴ 150
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0
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809
views
error running the example of the widget function in the widgetTools library
widgetTools widgetTools
18.0 years ago Hervé Pagès 16k
0
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1
reply
721
views
error running the example of the widget function in the widgetTools library
widgetTools widgetTools
updated 18.0 years ago by ★ 7.4k • written 18.0 years ago by ▴ 80
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3
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1.3k
views
widgetTools wFuns problem
DynDoc tkWidgets reposTools widgetTools DynDoc tkWidgets reposTools widgetTools
updated 18.2 years ago by ★ 2.9k • written 18.2 years ago by ▴ 80
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1
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906
views
ReadAffy question
GO Ruuid DynDoc annotate genefilter multtest tkWidgets reposTools affy widgetTools limma
updated 18.3 years ago by 65k • written 18.3 years ago by ▴ 890
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9
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1.9k
views
Getting LimmaGUI to run
tkWidgets widgetTools limmaGUI widgetInvoke tkWidgets widgetTools limmaGUI widgetInvoke
18.8 years ago chris umbricht ▴ 110
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2
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3.3k
views
Can't install tcl/tk on Mac OS 10.3.7
widgetTools widgetTools
updated 19.3 years ago by ▴ 430 • written 19.3 years ago by ▴ 10
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0
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1.0k
views
batch vs interactive behavior of reposTools()
Biobase DynDoc tkWidgets widgetTools Biobase DynDoc tkWidgets widgetTools
19.4 years ago Marion Hakanson ▴ 50
0
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0
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1.1k
views
Tcl install
genefilter widgetTools genefilter widgetTools
19.5 years ago Matt McCall ▴ 50
0
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0
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1.1k
views
Re: Annotate clones Bioconductor beginner
Microarray Annotation GUI annotate widgetTools AnnBuilder Microarray Annotation GUI
20.4 years ago John Zhang ★ 2.9k
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3
replies
1.2k
views
Recent changes to Bioconductor packages
reposTools graph widgetTools limma reposTools graph widgetTools limma
20.6 years ago • updated 20.5 years ago madman@jimmy.harvard.edu ▴ 850
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0
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832
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update.packages
widgetTools widgetTools
20.8 years ago Justin Borevitz ▴ 90
0
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1
reply
864
views
ReadAffy error
widgetTools widgetTools
updated 20.8 years ago by ★ 2.3k • written 20.8 years ago by ★ 1.4k
0
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0
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693
views
Error in loading bioconductor packages in Rterm and ESS+XEmacs modes
GUI widgetTools GUI widgetTools
21.0 years ago Dr Mushtaq Ahmed ▴ 20
0
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2
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957
views
Problems Getting Started
cdf widgetTools cdf widgetTools
updated 21.1 years ago by ★ 1.1k • written 21.1 years ago by ▴ 340
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8
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2.0k
views
widgetTools
affy widgetTools affy widgetTools
updated 21.1 years ago by ▴ 40 • written 21.1 years ago by ▴ 90
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1
reply
843
views
Installation failed
reposTools widgetTools reposTools widgetTools
updated 21.2 years ago by ★ 3.9k • written 21.2 years ago by ▴ 30
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4
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1.2k
views
Enabling the widget option
tkWidgets affy widgetTools tkWidgets affy widgetTools
21.3 years ago Tapan Mehta ▴ 270
30 results • Page 1 of 1
Recent ...
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Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Comment: PCA plot suggestions by JKim • 0
cross post: https://www.biostars.org/p/9593486/
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
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