Showing : xps • reset
9
votes
7
replies
1.4k
views
[xps] Problems building scheme for DroGene 1.1 ST arrays in xps
xps
updated 5.6 years ago by ★ 3.9k • written 5.6 years ago by • 0
6
votes
25
replies
3.2k
views
How to import normalized file (using xps) to limma for differential expressed genes?
xps heatmap limma
updated 8.1 years ago by ★ 3.9k • written 8.1 years ago by ▴ 110
6
votes
8
replies
2.3k
views
Gene level analysis of Affymetrix GeneChip Mouse Exon Arrays
affy aroma.affymetrix exon array xps oligo
6.8 years ago Gordon Smyth 50k
4
votes
21
replies
3.4k
views
RMA normaliztion using XPS
normalization xps
updated 9.0 years ago by ★ 3.9k • written 9.1 years ago by • 0
3
votes
7
replies
1.5k
views
To find Differential expressed exons using xps package
xps exons
updated 8.1 years ago by ★ 3.9k • written 8.1 years ago by ▴ 110
2
votes
5
replies
1.8k
views
[XPS]Installation of xps package in macOS Sierra
xps package installation
updated 7.2 years ago by 25k • written 7.2 years ago by • 0
2
votes
2
replies
2.9k
views
HuGene 2.0 ST CDF files and xps
xps hugene20
updated 9.6 years ago by ★ 3.9k • written 9.6 years ago by ▴ 60
2
votes
11
replies
2.4k
views
RNA degradation plot interpretation
xps rnadegradationplot interpretation
updated 8.1 years ago by ★ 3.9k • written 8.2 years ago by ▴ 110
2
votes
8
replies
2.2k
views
Cannot install xps package, Mac OS 10.11, R 3.3
xps installation
updated 7.4 years ago by ★ 3.9k • written 7.4 years ago by • 0
2
votes
3
replies
1.4k
views
MAS5 algorithm in mas5() function of xps function when process Human Gene 1.0 ST Array or Human Exon 1.0 ST Array
xps MAS5 algorithm Human Gene 1.0 ST Array Exon Array
7.7 years ago linweili_tj • 0
1
vote
3
replies
1.7k
views
Problem installing XPS
xps r
updated 9.1 years ago by ★ 3.9k • written 9.1 years ago by • 0
1
vote
34
replies
3.8k
views
how to check which probesets belong to which transcript?
xps affymetrix microarrays humangene2.0ST micro array data
updated 8.1 years ago by ★ 3.9k • written 8.1 years ago by ▴ 110
1
vote
2
replies
1.5k
views
[xps]Analysis of Affymetrix Clarion S array using xps package
xps
updated 7.2 years ago by ★ 3.9k • written 7.2 years ago by • 0
1
vote
2
replies
2.0k
views
Installation of "xps" on windows 7 : error message
xps windows 7 Install
updated 9.6 years ago by ★ 3.9k • written 9.6 years ago by • 0
1
vote
5
replies
1.6k
views
Error: Number of PMs or MMs is zero (xps package)
rlm plm rnadegradationplot xps
updated 8.2 years ago by ★ 3.9k • written 8.2 years ago by ▴ 110
1
vote
4
replies
3.8k
views
Detection Above Background (DABG) on Gene Level for Exon and Gene Arrays
probe xps probe xps
updated 13.6 years ago by ★ 3.9k • written 13.6 years ago by ▴ 80
0
votes
0
replies
1.3k
views
Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
Epigenetics Cancer probe affy xps Epigenetics Cancer probe affy xps
15.8 years ago Martin Morgan 25k
0
votes
8
replies
1.4k
views
HuGene annotation and htmls
Annotation convert xps Annotation convert xps
updated 15.1 years ago by ★ 7.2k • written 15.1 years ago by ▴ 510
0
votes
4
replies
2.1k
views
LoadLibrary failures when loading RMySQL and xps packages
xps xps
15.8 years ago Marie Chehani Alles ▴ 40
0
votes
10
replies
1.6k
views
subset in XPS
Normalization Biobase xps Normalization Biobase xps
updated 15.8 years ago by ★ 3.9k • written 15.8 years ago by ▴ 80
0
votes
1
reply
711
views
Rma method for library xps
xps xps
updated 15.1 years ago by ★ 3.9k • written 15.1 years ago by ▴ 30
0
votes
3
replies
936
views
subset in XPS
xps xps
updated 15.9 years ago by ★ 3.9k • written 15.9 years ago by ▴ 80
0
votes
3
replies
1.3k
views
package xps: export.filter issues
Annotation probe xps Annotation probe xps
updated 11.7 years ago by ★ 3.9k • written 11.7 years ago by ▴ 90
0
votes
7
replies
1.3k
views
Xps package : errors and RMA difference with Partek GS
Normalization xps Normalization xps
updated 15.1 years ago by ★ 3.9k • written 15.1 years ago by ▴ 110
0
votes
5
replies
2.3k
views
HuGene-1_0-st-v1.r4.pgf
Annotation xps Annotation xps
updated 15.1 years ago by ★ 3.9k • written 15.1 years ago by ▴ 510
0
votes
1
reply
790
views
library xps
xps xps
updated 15.1 years ago by ★ 3.9k • written 15.1 years ago by ▴ 30
0
votes
2
replies
1.5k
views
FW: PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
updated 13.4 years ago by ▴ 120 • written 13.4 years ago by ▴ 10
0
votes
4
replies
1.3k
views
xps - number of probesets for HuGene10ST array
Microarray Normalization xps Microarray Normalization xps
15.0 years ago Michael Walter ▴ 160
0
votes
12
replies
1.7k
views
quantile robust and RMA in xps
Normalization PROcess xps Normalization PROcess xps
updated 15.0 years ago by ★ 3.9k • written 15.0 years ago by ▴ 510
0
votes
0
replies
506
views
Illumina vs Affy chips
affy beadarray lumi xps affy beadarray lumi xps
14.9 years ago Sean Davis 21k
0
votes
1
reply
758
views
XPS vs APT
xps xps
updated 15.1 years ago by ★ 3.9k • written 15.1 years ago by ▴ 120
0
votes
2
replies
1.1k
views
Error when loading xps
xps xps
15.1 years ago Michael Walter ▴ 160
0
votes
0
replies
830
views
Error in rma When Using Temp File from xps Package
Preprocessing PROcess xps Preprocessing PROcess xps
16.0 years ago cstrato ★ 3.9k
0
votes
5
replies
1.3k
views
Package "xps" import.data error
xps xps
updated 15.2 years ago by ★ 3.9k • written 15.2 years ago by ▴ 60
0
votes
1
reply
1.2k
views
Installing xps on Mac OS 10.4.11.
xps xps
updated 15.2 years ago by ★ 3.9k • written 15.2 years ago by ▴ 750
0
votes
2
replies
1.0k
views
Error in rma When Using Temp File from xps Package
PROcess xps PROcess xps
updated 16.0 years ago by ★ 3.9k • written 16.0 years ago by ▴ 590
0
votes
4
replies
1.6k
views
R: R: Probe-level analysis of exon arrays using xps
Annotation Normalization Breast Prostate probe Category xps Annotation Normalization xps
updated 12.7 years ago by ★ 3.9k • written 12.7 years ago by ▴ 80
0
votes
1
reply
1.1k
views
Problem with rma function in xps package with Affymetrix Human Gene 1.0 ST Array
Preprocessing PROcess xps Preprocessing PROcess xps
updated 14.5 years ago by ★ 3.9k • written 14.5 years ago by ▴ 170
0
votes
2
replies
990
views
Subsetting in xps
affy xps affy xps
14.5 years ago Michael Walter ▴ 160
0
votes
2
replies
973
views
Problem of loading xps package
xps xps
updated 14.4 years ago by ★ 3.9k • written 14.4 years ago by ▴ 20
0
votes
2
replies
585
views
Importing data in Xps
xps xps
updated 14.4 years ago by ★ 3.9k • written 14.4 years ago by ▴ 10
0
votes
2
replies
1.5k
views
vsn and oligo (or xps?) packages for GeneST expression arrays
vsn oligo xps vsn oligo xps
updated 14.3 years ago by ★ 3.9k • written 14.3 years ago by ▴ 270
0
votes
4
replies
1.5k
views
Problem with xps package installation on Mac platform
xps xps
updated 14.2 years ago by ▴ 50 • written 14.2 years ago by ★ 3.9k
0
votes
0
replies
683
views
affymetrix gene level arrays - cdf issue
cdf xps cdf xps
14.1 years ago Stefanie Tauber ▴ 40
0
votes
2
replies
927
views
error in import.exon.scheme, XPS package
xps xps
updated 14.1 years ago by ★ 3.9k • written 14.1 years ago by ▴ 10
0
votes
3
replies
1.1k
views
XPS: Human Gene 1.0 ST v1 Summarization using Affy Library r4
Annotation xps Annotation xps
updated 14.0 years ago by ★ 3.9k • written 14.0 years ago by ▴ 20
0
votes
2
replies
1.1k
views
problem with xps and annotation file from affymetrix mirna array
miRNA Annotation cdf probe xps miRNA Annotation cdf probe xps
updated 14.0 years ago by ★ 3.9k • written 14.0 years ago by ▴ 40
0
votes
0
replies
695
views
XPS: scheme file repository and other news
Annotation xps Annotation xps
14.0 years ago cstrato ★ 3.9k
0
votes
6
replies
1.3k
views
xps - creating ROOT scheme fi les
Annotation cdf xps Annotation cdf xps
updated 13.9 years ago by ★ 3.9k • written 13.9 years ago by ▴ 170
0
votes
2
replies
754
views
About xps Unifiter
xps xps
updated 14.6 years ago by ★ 3.9k • written 14.6 years ago by ▴ 40
50 results • Page 1 of 1
Recent ...
Replies
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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