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Comment: C: Interaction with DESeq2 via DiffBind
6.5 years ago rbronste ▴ 60
0
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0
replies
788
views
Comment: C: Pre-filtering DESeqDataSetFromMatrix input
6.5 years ago rbronste ▴ 60
1
vote
2
replies
788
views
Pre-filtering DESeqDataSetFromMatrix input
deseq2 differential binding analysis
updated 6.5 years ago by 65k • written 6.5 years ago by ▴ 60
2
votes
1
reply
1.1k
views
Receiving error trying to import matrix into DESeq2
deseq2 deseq differential binding analysis
updated 6.5 years ago by ▴ 60 • written 6.5 years ago by ▴ 60
1
vote
1
reply
1.3k
views
Changing R package dependencies
package installation dependencies bagfootr bagfoot
updated 6.5 years ago by 21k • written 6.5 years ago by ▴ 60
0
votes
1
reply
1.0k
views
Pseudo-coloring DiffBind volcano plot
diffbind chipseq volcanoplot ggplot2
updated 6.6 years ago by ★ 5.2k • written 6.6 years ago by ▴ 60
1
vote
2
replies
1.2k
views
DiffBind DESeq2 MA plot skewed
diffbind deseq2 maplot
updated 6.6 years ago by ★ 5.2k • written 6.6 years ago by ▴ 60
0
votes
0
replies
1.2k
views
Assigning stats to differential peak locations relative to TSS
chipseeker chipseq statistics
6.6 years ago rbronste ▴ 60
2
votes
1
reply
2.6k
views
ChIPseeker mapping between keys and columns
chipseeker chipseq
updated 6.6 years ago by ▴ 680 • written 6.6 years ago by ▴ 60
1
vote
1
reply
816
views
Diffbind Consensus vs Differential peak sets from same count
diffbind chipseq
updated 6.6 years ago by ★ 5.2k • written 6.6 years ago by ▴ 60
0
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0
replies
889
views
Comment: C: DiffBind masks for counts
6.7 years ago rbronste ▴ 60
0
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0
replies
1.4k
views
Comment: C: DiffBind contrasts issue
6.7 years ago rbronste ▴ 60
1
vote
2
replies
889
views
DiffBind masks for counts
diffbind chipseq
updated 6.7 years ago by ★ 5.2k • written 6.7 years ago by ▴ 60
2
votes
2
replies
1.4k
views
DiffBind contrasts issue
diffbind chipseq
updated 6.7 years ago by ★ 5.2k • written 6.7 years ago by ▴ 60
0
votes
0
replies
2.2k
views
Comment: C: samtools loading in R
6.8 years ago rbronste ▴ 60
3
votes
4
replies
2.2k
views
samtools loading in R
samtools rsamtools
updated 6.8 years ago by 25k • written 6.8 years ago by ▴ 60
0
votes
1
reply
1.8k
views
Comment: C: ddCT Package for StepOnePlus qPCR output
6.8 years ago rbronste ▴ 60
0
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0
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1.8k
views
Comment: C: ddCT Package for StepOnePlus qPCR output
6.8 years ago rbronste ▴ 60
1
vote
4
replies
1.8k
views
ddCT Package for StepOnePlus qPCR output
qPCR ddCt geneexpression
updated 6.8 years ago by ▴ 120 • written 6.8 years ago by ▴ 60
0
votes
2
replies
3.5k
views
Comment: C: DiffBind BED output with score
6.9 years ago rbronste ▴ 60
0
votes
0
replies
841
views
Comment: C: write.table of posterior probabilities error
7.1 years ago rbronste ▴ 60
0
votes
1
reply
841
views
Comment: C: write.table of posterior probabilities error
7.1 years ago rbronste ▴ 60
1
vote
4
replies
841
views
write.table of posterior probabilities error
R centipede
updated 7.1 years ago by 65k • written 7.1 years ago by ▴ 60
1
vote
1
reply
631
views
Sorting the VIEW index in ascending/descending order
R diffbind
updated 7.1 years ago by 690 • written 7.1 years ago by ▴ 60
0
votes
0
replies
1.1k
views
Centipede foot printing export
footprinting centipede atac-seq dnaseq
7.1 years ago rbronste ▴ 60
0
votes
0
replies
839
views
Visualizing motif instances in peak data
motifs TF peakset plots
7.2 years ago rbronste ▴ 60
0
votes
1
reply
2.1k
views
Comment: C: DiffBind MA plot
7.2 years ago rbronste ▴ 60
2
votes
3
replies
2.1k
views
DiffBind MA plot
diffbind ma plot
updated 7.2 years ago by ★ 5.2k • written 7.2 years ago by ▴ 60
0
votes
0
replies
3.5k
views
Comment: C: DiffBind BED output with score
7.2 years ago rbronste ▴ 60
0
votes
1
reply
3.5k
views
Comment: C: DiffBind BED output with score
7.2 years ago rbronste ▴ 60
0
votes
1
reply
3.5k
views
Comment: C: DiffBind BED output with score
7.2 years ago rbronste ▴ 60
3
votes
9
replies
3.5k
views
DiffBind BED output with score
diffbind differential binding analysis
updated 7.2 years ago by ★ 5.2k • written 7.2 years ago by ▴ 60
0
votes
1
reply
644
views
Exporting differential peak sets, based on fold change and FDR
diffbind
updated 7.2 years ago by ★ 5.2k • written 7.3 years ago by ▴ 60
0
votes
1
reply
802
views
Does dba object analysis indicate "score" in dba.count?
diffbind
updated 7.2 years ago by ★ 5.2k • written 7.3 years ago by ▴ 60
2
votes
5
replies
1.1k
views
Adding SummarizedExperiment function
summarizedexperiment
7.3 years ago rbronste ▴ 60
0
votes
1
reply
1.1k
views
Answer: A: Adding SummarizedExperiment function
7.3 years ago rbronste ▴ 60
0
votes
0
replies
1.1k
views
Comment: C: Adding SummarizedExperiment function
7.3 years ago rbronste ▴ 60
0
votes
1
reply
815
views
DiffBind q value analysis
diffbind
updated 7.3 years ago by ▴ 650 • written 7.3 years ago by ▴ 60
0
votes
1
reply
2.2k
views
Comment: C: DiffBind for open chromatin mapping
7.3 years ago rbronste ▴ 60
0
votes
0
replies
2.2k
views
Comment: C: DiffBind for open chromatin mapping
7.3 years ago rbronste ▴ 60
1
vote
4
replies
2.2k
views
DiffBind for open chromatin mapping
diffbind dnaseseq atac-seq
7.3 years ago rbronste ▴ 60
0
votes
3
replies
1.5k
views
DiffBind EdgeR vs DeSeq2 diff peak counts
diffbind
7.3 years ago rbronste ▴ 60
0
votes
0
replies
1.5k
views
Answer: A: DiffBind EdgeR vs DeSeq2 diff peak counts
7.3 years ago rbronste ▴ 60
0
votes
0
replies
1.5k
views
Answer: A: DiffBind EdgeR vs DeSeq2 diff peak counts
7.3 years ago rbronste ▴ 60
144 results • Page 3 of 3
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