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Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
27 days ago mohammedtoufiq91 ▴ 10
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Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
28 days ago mohammedtoufiq91 ▴ 10
6
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10
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2.4k
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What type of counts data to import for performing Isoform analysis in edgeR
limma isoform edgeR salmon R
updated 18 days ago by ★ 4.6k • written 4 weeks ago by ▴ 10
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Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
29 days ago mohammedtoufiq91 ▴ 10
3
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2
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689
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Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
NanoStringNCTools limma ExpressionData RNASeq edgeR
7 months ago mohammedtoufiq91 ▴ 10
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Answer: Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
7 months ago mohammedtoufiq91 ▴ 10
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1.7k
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Comment: Comment: Question about RNAseq analysis in EdgeR to identify common and donor specific di
17 months ago mohammedtoufiq91 ▴ 10
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5
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1.7k
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Question about RNAseq analysis in EdgeR to identify common and donor specific differentially expressed genes
R edgeR RNASeq
17 months ago mohammedtoufiq91 ▴ 10
0
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1
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1.7k
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Comment: Comment: Question about RNAseq analysis in EdgeR to identify common and donor specific di
17 months ago mohammedtoufiq91 ▴ 10
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1.2k
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Comment: Comment: Question on constructing design matrix and defining contrasts for analysis
19 months ago mohammedtoufiq91 ▴ 10
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1.2k
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Comment: Comment: Question on constructing design matrix and defining contrasts for analysis
19 months ago mohammedtoufiq91 ▴ 10
3
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6
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1.2k
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Question on constructing design matrix and defining contrasts for analysis
wgcna DESeq2 edgeR limma design
updated 19 months ago by 52k • written 19 months ago by ▴ 10
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2
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1.2k
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Comment: Comment: Question on constructing design matrix and defining contrasts for analysis
updated 19 months ago by 52k • written 19 months ago by ▴ 10
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1.6k
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Comment: Comment: Question about setting threshold using filtering by expression on genes in edgeR
19 months ago mohammedtoufiq91 ▴ 10
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1.6k
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Comment: Comment: Question about setting threshold using filtering by expression on genes in edgeR
19 months ago mohammedtoufiq91 ▴ 10
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Comment: Comment: Question about setting threshold using filtering by expression on genes in edgeR
19 months ago mohammedtoufiq91 ▴ 10
5
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7
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1.6k
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Question about setting threshold using filtering by expression on genes in edgeR
filtering RNA-Seq CPM edgeR filterByExpr
updated 19 months ago by 52k • written 19 months ago by ▴ 10
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Comment: Comment: Question about filter by expression (filterByExpr) in edgeR
21 months ago mohammedtoufiq91 ▴ 10
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2.6k
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Comment: Comment: Question about filter by expression (filterByExpr) in edgeR
21 months ago mohammedtoufiq91 ▴ 10
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2.6k
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Comment: Comment: Question about filter by expression (filterByExpr) in edgeR
21 months ago mohammedtoufiq91 ▴ 10
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0
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2.6k
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Comment: Comment: Question about filter by expression (filterByExpr) in edgeR
21 months ago mohammedtoufiq91 ▴ 10
0
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1
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2.6k
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Comment: Comment: Question about filter by expression (filterByExpr) in edgeR
21 months ago mohammedtoufiq91 ▴ 10
3
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9
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2.6k
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Question about filter by expression (filterByExpr) in edgeR
CPM filterByExpr edgeR design model.matrix
21 months ago mohammedtoufiq91 ▴ 10
0
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0
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967
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Comment: Comment: Question about avereps function of limma
21 months ago mohammedtoufiq91 ▴ 10
2
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2
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967
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Question about avereps function of limma
avereps probes average limma Microarray
updated 21 months ago by 52k • written 21 months ago by ▴ 10
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0
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1.8k
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Comment: Comment: Error in running Dispersion estimation analysis in EdgeR
22 months ago mohammedtoufiq91 ▴ 10
0
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1
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1.8k
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Comment: Comment: Error in running Dispersion estimation analysis in EdgeR
22 months ago mohammedtoufiq91 ▴ 10
0
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1
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1.8k
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Comment: Comment: Error in running Dispersion estimation analysis in EdgeR
22 months ago mohammedtoufiq91 ▴ 10
0
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1
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1.8k
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Comment: Comment: Error in running Dispersion estimation analysis in EdgeR
22 months ago mohammedtoufiq91 ▴ 10
6
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11
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1.8k
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Error in running Dispersion estimation analysis in EdgeR
edgeR DifferentialExpression limma design RNASeq
22 months ago mohammedtoufiq91 ▴ 10
0
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1
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1.8k
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Comment: Comment: Error in running Dispersion estimation analysis in EdgeR
22 months ago mohammedtoufiq91 ▴ 10
0
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0
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2.7k
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Comment: Comment: Which input file is used for DGEList in EgdeR?
22 months ago mohammedtoufiq91 ▴ 10
0
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1
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2.7k
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Comment: Comment: Which input file is used for DGEList in EgdeR?
22 months ago mohammedtoufiq91 ▴ 10
6
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10
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2.7k
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Which input file is used for DGEList in EgdeR?
salmon edgeR tximport nf-core gene_counts
updated 8 months ago by • 0 • written 22 months ago by ▴ 10
0
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1
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4.9k
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Comment: Comment: How to identify top most variable genes from log2 normalized data?
2.0 years ago mohammedtoufiq91 ▴ 10
0
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1
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4.9k
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Comment: Comment: How to identify top most variable genes from log2 normalized data?
2.0 years ago mohammedtoufiq91 ▴ 10
4
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5
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4.9k
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How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 22 months ago by 52k • written 2.0 years ago by ▴ 10
0
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0
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1.4k
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Comment: Comment: Question about making Contrasts for comparisons and assignment of values
2.0 years ago mohammedtoufiq91 ▴ 10
0
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1
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1.4k
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Comment: Comment: Question about making Contrasts for comparisons and assignment of values
2.0 years ago mohammedtoufiq91 ▴ 10
0
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1
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1.4k
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Comment: Comment: Question about making Contrasts for comparisons and assignment of values
2.0 years ago mohammedtoufiq91 ▴ 10
3
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6
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1.4k
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Question about making Contrasts for comparisons and assignment of values
edgeR contrasts limma design model.matrix
2.0 years ago mohammedtoufiq91 ▴ 10
0
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0
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2.5k
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Comment: Comment: How to interpret Histogram of average log2 CPM filtering in EdgeR?
2.1 years ago mohammedtoufiq91 ▴ 10
0
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1
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2.5k
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Comment: Comment: How to interpret Histogram of average log2 CPM filtering in EdgeR?
2.1 years ago mohammedtoufiq91 ▴ 10
0
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1
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2.5k
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Comment: Comment: How to interpret Histogram of average log2 CPM filtering in EdgeR?
2.1 years ago mohammedtoufiq91 ▴ 10
5
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6
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2.5k
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How to interpret Histogram of average log2 CPM filtering in EdgeR?
CPM filterByExpr edgeR histogram rowsums
2.1 years ago mohammedtoufiq91 ▴ 10
0
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0
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1.0k
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Comment: Comment: Extracting specific comparisons after fitting model in EdgeR
2.1 years ago mohammedtoufiq91 ▴ 10
1
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2
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1.0k
views
Extracting specific comparisons after fitting model in EdgeR
edgeR limma design RNASeq model.matrix
2.1 years ago mohammedtoufiq91 ▴ 10
0
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0
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987
views
Comment: Comment: Does negative corfit$consensus cause issues while fitting a model in limma
2.1 years ago mohammedtoufiq91 ▴ 10
1
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2
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987
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Does negative corfit$consensus cause issues while fitting a model in limma
limma R design model.matrix
2.1 years ago mohammedtoufiq91 ▴ 10
0
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0
replies
2.4k
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Comment: Comment: Question on performing filtering by gene expression on a normalized matrix in li
2.1 years ago mohammedtoufiq91 ▴ 10
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