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0
votes
2
replies
842
views
ggbio tracks not aligned when legend present in one track
ggbio
updated 4.5 years ago by ★ 11k • written 4.5 years ago by ▴ 740
1
vote
9
replies
1.4k
views
stackStringsFromBam equivalent for GAlignments with seq
genomicalignments stackStringsFromBam sequenceLayer
4.9 years ago Janet Young ▴ 740
0
votes
2
replies
900
views
rtracklayer colorByStrand - is it possible to add quotes?
rtracklayer
6.1 years ago Janet Young ▴ 740
0
votes
4
replies
1.2k
views
ensemblVEP supported versions, and troubleshooting
ensemblVEP
updated 6.2 years ago by 3.9k • written 6.2 years ago by ▴ 740
0
votes
3
replies
1.4k
views
integer overflow in ChIPpeakAnno assignChromosomeRegion
ChIPpeakAnno assignChromosomeRegion
updated 6.3 years ago by ★ 4.3k • written 6.3 years ago by ▴ 740
0
votes
1
reply
686
views
binnedaverage - is it possible to add an na.rm option?
genomicranges
updated 7.0 years ago by 16k • written 7.0 years ago by ▴ 740
0
votes
7
replies
4.4k
views
gviz: controlling track labels
gviz
7.8 years ago Janet Young ▴ 740
0
votes
2
replies
1.7k
views
getting masked sequence from BSgenome: can I use Views or getSeq?
updated 8.5 years ago by • 0 • written 11.6 years ago by ▴ 740
1
vote
10
replies
2.5k
views
GenomicRanges bug in follow?
genomicranges
8.7 years ago • updated 8.6 years ago Janet Young ▴ 740
2
votes
5
replies
3.8k
views
GRanges - add names when constructing a new GRanges, rather than afterwards?
genomicranges
updated 8.7 years ago by ★ 11k • written 8.7 years ago by ▴ 740
5
votes
10
replies
3.1k
views
tileGenome for overlapping ranges?
genomicranges
updated 8.8 years ago by • 0 • written 9.3 years ago by ▴ 740
0
votes
3
replies
1.5k
views
narrow function for GRangesList objects?
genomicranges
8.8 years ago Janet Young ▴ 740
1
vote
5
replies
2.7k
views
bioclite lib.loc and R_LIBS_USER
biocinstaller
8.8 years ago Janet Young ▴ 740
0
votes
3
replies
2.3k
views
problem with cbind on GRanges object - new bug?
genomicranges cbind
9.2 years ago Janet Young ▴ 740
2
votes
5
replies
1.5k
views
making a RleViewsList object gets slow with many chromosomes
views iranges rle
9.3 years ago Janet Young ▴ 740
1
vote
4
replies
1.1k
views
devel version: rtracklayer depends on GenomicRanges 1.19.3 but that's not available
rtracklayer genomicranges bioclite
updated 9.6 years ago by ★ 7.2k • written 9.6 years ago by ▴ 740
3
votes
6
replies
3.3k
views
Rgraphviz installation problem
rgraphviz Rgraphviz
9.7 years ago Janet Young ▴ 740
7
votes
3
replies
944
views
Searching the archives
mailing list
updated 9.7 years ago by 25k • written 9.7 years ago by ▴ 740
0
votes
1
reply
1.7k
views
Biostrings readDNAMultipleAlignment broken for fasta input
Alignment Biostrings Alignment Biostrings
updated 9.9 years ago by 16k • written 9.9 years ago by ▴ 740
0
votes
9
replies
1.3k
views
second GenomicRanges request - enable query-self comparison (and so ignoreSelf and ignoreRedundant) for GRangesList objects?
updated 10.0 years ago by ★ 11k • written 10.0 years ago by ▴ 740
0
votes
0
replies
2.3k
views
GenomicRanges request - enable ignore.strand for findOverlaps comparing query with itself?
10.0 years ago Janet Young ▴ 740
0
votes
2
replies
1.9k
views
rtracklayer export: enable trackline for GRanges and RleLists, etc?
updated 10.2 years ago by ★ 11k • written 10.2 years ago by ▴ 740
0
votes
9
replies
2.0k
views
variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?
VariantAnnotation Cancer Yeast annotate Biostrings VariantAnnotation VariantAnnotation
updated 10.3 years ago by 16k • written 10.3 years ago by ▴ 740
0
votes
2
replies
811
views
Gviz - Plot genes and data from - strand (3'-5') in 5'-3' direction
Cancer Cancer
updated 10.5 years ago by ★ 1.6k • written 10.5 years ago by ▴ 740
0
votes
2
replies
1.2k
views
ggbio tracks with labelled: problem when I add a main title
Cancer ggbio Cancer ggbio
10.5 years ago Janet Young ▴ 740
0
votes
16
replies
4.1k
views
subset a RleList using GRanges object?
Coverage Cancer IRanges Coverage Cancer IRanges
updated 10.5 years ago by 16k • written 10.5 years ago by ▴ 740
0
votes
0
replies
674
views
rtracklayer problem on large number of GRanges
Cancer Cancer
10.8 years ago Janet Young ▴ 740
0
votes
0
replies
729
views
rtracklayer carrying over query results
rtracklayer rtracklayer
10.8 years ago Janet Young ▴ 740
0
votes
5
replies
1.3k
views
rtracklayer error?
Cancer rtracklayer Cancer rtracklayer
10.8 years ago Janet Young ▴ 740
0
votes
3
replies
1.2k
views
speed of runmed on SimpleRleList
Coverage Cancer Coverage Cancer
updated 11.3 years ago by 16k • written 11.3 years ago by ▴ 740
0
votes
1
reply
1.2k
views
repeat mask for mm10?
BSgenome BSgenome BSgenome BSgenome
11.6 years ago Janet Young ▴ 740
0
votes
1
reply
709
views
bug in Biostrings mismatchTable?
Alignment Alignment
updated 11.6 years ago by 16k • written 11.6 years ago by ▴ 740
0
votes
1
reply
522
views
can I use alignment utilities (mismatchTable, etc) on externally-generated alignments?
Alignment Cancer Alignment Cancer
updated 11.6 years ago by ★ 11k • written 11.6 years ago by ▴ 740
0
votes
1
reply
801
views
issue with Views on PairwiseAlignmentsSingleSubject?
updated 11.7 years ago by 16k • written 11.7 years ago by ▴ 740
0
votes
1
reply
894
views
nearest for GRanges ignoring overlapping ranges
Cancer IRanges GenomicRanges Cancer IRanges GenomicRanges
updated 11.8 years ago by ★ 6.8k • written 11.8 years ago by ▴ 740
0
votes
2
replies
1.1k
views
distanceToNearest for GRanges?
IRanges GenomicRanges IRanges GenomicRanges
updated 11.8 years ago by ★ 6.8k • written 11.8 years ago by ▴ 740
0
votes
1
reply
684
views
useDevel and update all packages - wrong library location?
Cancer Cancer
updated 11.8 years ago by 25k • written 11.8 years ago by ▴ 740
0
votes
3
replies
1.2k
views
rtracklayer blocks function
rtracklayer rtracklayer
updated 11.8 years ago by ★ 11k • written 11.8 years ago by ▴ 740
0
votes
13
replies
1.9k
views
PWMscoreStartingAt and ambiguous subject seqs
Cancer Biostrings GLAD Cancer Biostrings GLAD
updated 12.0 years ago by 16k • written 12.0 years ago by ▴ 740
1
vote
3
replies
1.0k
views
distanceToNearest for GRanges?
Cancer Cancer
updated 12.2 years ago by ★ 1.6k • written 12.2 years ago by ▴ 740
0
votes
1
reply
781
views
lumiHumanAll.db - wrong information in lumiHumanAllCHR for some probes?
Cancer probe Cancer probe
updated 12.4 years ago by 6.7k • written 12.4 years ago by ▴ 740
0
votes
0
replies
936
views
unimplemented options select=last and select=arbitrary in findOverlaps for GRanges
12.5 years ago Janet Young ▴ 740
0
votes
1
reply
902
views
possible bug in ShortRead qa/ppnCount
updated 12.5 years ago by 25k • written 12.5 years ago by ▴ 740
0
votes
8
replies
3.4k
views
views on Rle using GRanges object
RNASeq Coverage GO rtracklayer RNASeq Coverage GO rtracklayer
updated 12.8 years ago by 16k • written 12.8 years ago by ▴ 740
0
votes
1
reply
1.2k
views
rtracklayer import.bw on gz file makes R crash
updated 12.8 years ago by ★ 11k • written 12.8 years ago by ▴ 740
0
votes
2
replies
1.7k
views
import.bw to Rle?
GO Cancer convert GO Cancer convert
updated 12.8 years ago by ★ 11k • written 12.8 years ago by ▴ 740
0
votes
2
replies
995
views
lumi/Biobase combine and gplots interaction
Cancer Cancer
updated 12.9 years ago by 25k • written 12.9 years ago by ▴ 740
0
votes
3
replies
1.0k
views
lumi and plotHousekeepingGene
Cancer lumi Cancer lumi
updated 13.0 years ago by ▴ 440 • written 13.0 years ago by ▴ 740
0
votes
4
replies
1.3k
views
Biobase 2.8 with R 2.13.0 fails on my Mac
updated 13.1 years ago by 6.7k • written 13.1 years ago by ▴ 740
0
votes
0
replies
925
views
request: calculate coverage with weight on RangedData object
Coverage Cancer IRanges Coverage Cancer IRanges
14.2 years ago Janet Young ▴ 740
58 results • Page 1 of 2
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