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10.0k
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Comment: C: extracting gene names, gene id and transcript id
6.4 years ago Bogdan ▴ 670
0
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1
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1.8k
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Comment: C: the closest gene to a breakpoint
6.4 years ago Bogdan ▴ 670
2
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0
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546
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sharing BiocWorkshops 2018
RNA-seq
6.4 years ago Bogdan ▴ 670
0
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0
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11k
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Comment: C: subsetByOverlaps : comparing GRANGES and keeping all the information in the MET
6.4 years ago Bogdan ▴ 670
0
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0
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11k
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Comment: C: subsetByOverlaps : comparing GRANGES and keeping all the information in the MET
6.4 years ago Bogdan ▴ 670
0
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1
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11k
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Comment: C: subsetByOverlaps : comparing GRANGES and keeping all the information in the MET
6.4 years ago Bogdan ▴ 670
5
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9
replies
11k
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subsetByOverlaps : comparing GRANGES and keeping all the information in the METACOLUMNS
granges bedtools intersect
updated 6.4 years ago by ▴ 70 • written 6.4 years ago by ▴ 670
0
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1
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11k
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Comment: C: subsetByOverlaps : comparing GRANGES and keeping all the information in the MET
6.4 years ago Bogdan ▴ 670
0
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1
reply
11k
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Comment: C: intersecting GRANGES in keeping the information in the METACOLUMNS
6.4 years ago Bogdan ▴ 670
0
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0
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927
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display of synteny regions across multiple species
synteny translocation evolution conservation
6.4 years ago Bogdan ▴ 670
0
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0
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1.3k
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Comment: C: display of chromosomes (on the linear scale) and translocations
6.4 years ago Bogdan ▴ 670
0
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1
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1.3k
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display of chromosomes (on the linear scale) and translocations
ggviz ggplot2 gviz circlize Rcircos
6.5 years ago • updated 6.4 years ago Bogdan ▴ 670
0
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0
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1.6k
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Comment: C: single cell RNA-seq pipeline
6.5 years ago Bogdan ▴ 670
0
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3
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1.6k
views
single cell RNA-seq pipeline
rnaseq scRNA-seq
updated 6.5 years ago by ★ 28k • written 6.5 years ago by ▴ 670
0
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0
replies
1.1k
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Comment: C: visualization of chromatin interaction networks
6.5 years ago Bogdan ▴ 670
0
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2
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1.1k
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visualization of chromatin interaction networks
gviz ggbio karyotypeR
updated 6.5 years ago by ★ 28k • written 6.5 years ago by ▴ 670
0
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0
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1.9k
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Comment: C: an error in BioMart regarding gene annotations
6.5 years ago Bogdan ▴ 670
5
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11
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1.9k
views
an error in BioMart regarding gene annotations
biomart AnnotationDbi
updated 6.5 years ago by ▴ 50 • written 6.5 years ago by ▴ 670
0
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0
replies
1.9k
views
Comment: C: an error in BioMart regarding gene annotations
6.5 years ago Bogdan ▴ 670
0
votes
1
reply
1.9k
views
Comment: C: an error in BioMart regarding gene annotations
6.5 years ago Bogdan ▴ 670
0
votes
1
reply
1.9k
views
Comment: C: an error in BioMart regarding gene annotations
6.5 years ago Bogdan ▴ 670
0
votes
1
reply
1.8k
views
comparing 2 long BED files in R in an efficient way
bed vcf
updated 6.5 years ago by • 0 • written 6.5 years ago by ▴ 670
0
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0
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1.9k
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Comment: C: filtering a VCF file based on genotype
6.6 years ago Bogdan ▴ 670
0
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2
replies
1.9k
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filtering a VCF file based on genotype
variantannotation
updated 6.6 years ago by ★ 6.8k • written 6.7 years ago by ▴ 670
0
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0
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1.5k
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Comment: C: VariantAnnotation and filtering a VCF
6.7 years ago Bogdan ▴ 670
0
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1
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1.5k
views
VariantAnnotation and filtering a VCF
variantannotation
6.7 years ago Bogdan ▴ 670
0
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0
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1.1k
views
Comment: C: counting the sequencing reads in 10kb regions on a genome-wide scale
6.8 years ago Bogdan ▴ 670
3
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2
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1.1k
views
counting the sequencing reads in 10kb regions on a genome-wide scale
read counting CNV rsamtools
updated 6.8 years ago by 67k • written 6.8 years ago by ▴ 670
0
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0
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973
views
visualize CNV data based on WGS
CNV
7.0 years ago Bogdan ▴ 670
0
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0
replies
1.8k
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Comment: C: normalization of CHIP-seq samples (ChIP and INPUT)
7.1 years ago Bogdan ▴ 670
0
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1
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1.8k
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Comment: C: normalization of CHIP-seq samples (ChIP and INPUT)
7.1 years ago Bogdan ▴ 670
0
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5
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1.8k
views
normalization of CHIP-seq samples (ChIP and INPUT)
edgeR deseq2 voom limma
updated 7.1 years ago by ★ 28k • written 7.1 years ago by ▴ 670
0
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0
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1.8k
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Comment: C: normalization of CHIP-seq samples (ChIP and INPUT)
7.1 years ago Bogdan ▴ 670
0
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0
replies
875
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Comment: C: normalization of ChIP-seq
7.1 years ago Bogdan ▴ 670
1
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2
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875
views
normalization of ChIP-seq
limma edgeR deseq2
updated 7.1 years ago by ★ 7.9k • written 7.1 years ago by ▴ 670
0
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3
replies
1.1k
views
ChIPpeakAnno
updated 7.2 years ago by • 0 • written 12.5 years ago by ▴ 670
1
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1
reply
2.6k
views
extracting the exons coordinates on hg38
GenomeFeatures
7.3 years ago Bogdan ▴ 670
0
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0
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1.8k
views
Comment: C: about the runs with cn.mops
7.3 years ago Bogdan ▴ 670
0
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0
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2.5k
views
Answer: A: about using the names of the rows and columns in ComplexHeatmap
7.3 years ago Bogdan ▴ 670
0
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1
reply
2.5k
views
about using the names of the rows and columns in ComplexHeatmap
complexheatmap
7.3 years ago Bogdan ▴ 670
0
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1
reply
3.1k
views
Comment: C: an error on GRanges
7.3 years ago Bogdan ▴ 670
0
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0
replies
2.1k
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Comment: C: about setdiff() and meta-information in GRanges
7.3 years ago Bogdan ▴ 670
0
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1
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3.1k
views
Comment: C: an error on GRanges
7.3 years ago Bogdan ▴ 670
3
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2
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2.1k
views
about setdiff() and meta-information in GRanges
granges genomicranges
updated 7.3 years ago by 16k • written 7.3 years ago by ▴ 670
0
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4
replies
3.1k
views
an error on GRanges
granges
7.3 years ago Bogdan ▴ 670
0
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1
reply
1.8k
views
Answer: A: about the runs with cn.mops
7.3 years ago Bogdan ▴ 670
5
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7
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1.8k
views
about the runs with cn.mops
cn.mops referencecn.mops
7.4 years ago • updated 7.3 years ago Bogdan ▴ 670
0
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0
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1.8k
views
Comment: C: about the runs with cn.mops
7.4 years ago • updated 7.3 years ago Bogdan ▴ 670
0
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1
reply
1.8k
views
Comment: C: about the runs with cn.mops
7.4 years ago Bogdan ▴ 670
0
votes
0
replies
929
views
Comment: C: normalization of POL2 ChIP-seq for the calculation of POL2 Pausing Ratios
7.4 years ago Bogdan ▴ 670
429 results • Page 4 of 9
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