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Comment: C: Finding gene targets for a list of transcription factors
5.2 years ago alakatos ▴ 130
3
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4
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2.0k
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Finding gene targets for a list of transcription factors
transcription factors regulatory gene network gene targets
updated 5.2 years ago by ▴ 840 • written 5.3 years ago by ▴ 130
0
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3
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1.5k
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edgeR:fitted and partial expression values
edgeR cpm edger fitted model explained variance
updated 6.9 years ago by 52k • written 6.9 years ago by ▴ 130
0
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1
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4.2k
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Answer: A: Is Limma's removeBatchEffect() and log2() commutative?
6.9 years ago alakatos ▴ 130
0
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1.5k
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Comment: C: edgeR:fitted and partial expression values
6.9 years ago alakatos ▴ 130
0
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1
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1.9k
views
Incorporating 'offset' into edgeR pipeline
edgeR EDASeq offset
updated 6.9 years ago by ★ 28k • written 6.9 years ago by ▴ 130
0
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0
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1.2k
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Tools for classifying reads from xenograft samples?
rnaseq xenograph
7.4 years ago alakatos ▴ 130
0
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0
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3.6k
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Comment: C: Filtering DGEList object in edgeR
7.5 years ago alakatos ▴ 130
0
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0
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3.6k
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Comment: C: Filtering DGEList object in edgeR
7.5 years ago alakatos ▴ 130
2
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4
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3.6k
views
Filtering DGEList object in edgeR
DGElist filter edgeR
updated 7.5 years ago by 52k • written 7.5 years ago by ▴ 130
0
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2
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6.4k
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Comment: C: RNAseq with technical replicates: Does it sound right?
7.5 years ago alakatos ▴ 130
6
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4
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6.4k
views
RNAseq with technical replicates: Does it sound right?
rnaseq edger technical replicates
updated 7.5 years ago by ★ 7.9k • written 7.5 years ago by ▴ 130
0
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0
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2.5k
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Comment: C: RNAseq read coverage plot: What tool?
7.7 years ago alakatos ▴ 130
0
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3
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2.5k
views
RNAseq read coverage plot: What tool?
rnaseq visualization plotcoveragehist
updated 7.7 years ago by ★ 1.3k • written 7.7 years ago by ▴ 130
0
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0
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1.2k
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Comment: C: How to transform edgeR output into a cummeRbund object?
7.7 years ago alakatos ▴ 130
1
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2
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1.2k
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How to transform edgeR output into a cummeRbund object?
edgeR cummeRbund
7.7 years ago alakatos ▴ 130
0
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0
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1.8k
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Comment: C: RNA degradation plot for GeneChip Mouse Gene 2.0 ST Array
7.8 years ago alakatos ▴ 130
0
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1
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1.8k
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Comment: C: RNA degradation plot for GeneChip Mouse Gene 2.0 ST Array
7.8 years ago alakatos ▴ 130
0
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8
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1.8k
views
RNA degradation plot for GeneChip Mouse Gene 2.0 ST Array
rnadegradationplot affymetrix mouse gene arrays
updated 7.8 years ago by 67k • written 7.8 years ago by ▴ 130
0
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0
replies
839
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FunciSNP: an error message while running the tutorial
funcisnp software error
7.9 years ago alakatos ▴ 130
0
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0
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5.5k
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Comment: C: Limma: Warning Messages -- rlm -- Is there a way to fix it?
8.0 years ago alakatos ▴ 130
1
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2
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5.5k
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Limma: Warning Messages -- rlm -- Is there a way to fix it?
limma warning message
updated 8.0 years ago by 52k • written 8.0 years ago by ▴ 130
0
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0
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2.0k
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Comment: A: illumina gene expression array by limma
updated 8.3 years ago by 52k • written 8.3 years ago by ▴ 130
3
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2
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2.0k
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illumina gene expression array by limma
illumina human ht-12 v4 limma pipeline
8.3 years ago alakatos ▴ 130
0
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1
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2.2k
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Mouse Transcriptome Assay 1.0 processing and annotation
annotation MTA10 array processing
updated 9.2 years ago by ▴ 40 • written 9.7 years ago by ▴ 130
2
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0
replies
2.1k
views
NanoString Data Normalization Revisited
nanostring normalization
9.2 years ago alakatos ▴ 130
0
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4
replies
3.6k
views
GEOquery: Error Message
geoquery error
updated 9.3 years ago by ▴ 10 • written 9.5 years ago by ▴ 130
0
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0
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3.2k
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Comment: C: barplot with ggplot2 for gene expression
9.3 years ago alakatos ▴ 130
0
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2
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3.2k
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barplot with ggplot2 for gene expression
ggplot2 barplot gene expression gene expression
updated 9.4 years ago by 67k • written 9.4 years ago by ▴ 130
0
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0
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5.3k
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Comment: C: GEOquery: 0 features in the gset object
9.4 years ago alakatos ▴ 130
8
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4
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5.3k
views
GEOquery: 0 features in the gset object
geoquery
updated 2.1 years ago by • 0 • written 9.4 years ago by ▴ 130
0
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0
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2.3k
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Comment: C: Package "geNetClassifier": is this an "igraph' error?
9.4 years ago alakatos ▴ 130
0
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0
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2.3k
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Comment: C: Package "geNetClassifier": is this an "igraph' error?
9.4 years ago alakatos ▴ 130
0
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4
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2.3k
views
Package "geNetClassifier": is this an "igraph' error?
software error geNet igraph genetclassifier
updated 9.4 years ago by ▴ 20 • written 9.4 years ago by ▴ 130
0
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1
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14k
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Comment: C: Can I feed TCGA normalized count data to EdgeR for differential gene expression
9.4 years ago alakatos ▴ 130
1
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2
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2.5k
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Combining ExpressionSet objects : error with function merge() in "inSilicoMerging"
combine expresiondataset insilicomerging
9.4 years ago alakatos ▴ 130
0
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0
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2.5k
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Answer: A: Combining ExpressionSet objects : error with function merge() in "inSilicoMergi
9.4 years ago alakatos ▴ 130
0
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0
replies
14k
views
Comment: C: Can I feed TCGA normalized count data to EdgeR for differential gene expression
9.4 years ago alakatos ▴ 130
0
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0
replies
3.6k
views
Answer: A: GEOquery: Error Message
9.5 years ago alakatos ▴ 130
0
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0
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3.9k
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Comment: C: Mapping gene IDs to gene symbol of KEGG pathways with "Pathview"
9.5 years ago alakatos ▴ 130
0
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2
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3.9k
views
Mapping gene IDs to gene symbol of KEGG pathways with "Pathview"
Pathview KEGG annotation gene symbol visualization
updated 9.5 years ago by ★ 1.6k • written 9.5 years ago by ▴ 130
4
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6
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3.4k
views
A good alternative for RDavidWebService ??
functional annotation KEGG RDavidWebService
9.5 years ago alakatos ▴ 130
0
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0
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3.4k
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Answer: A: A good alternative for RDavidWebService ??
9.5 years ago alakatos ▴ 130
0
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0
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3.4k
views
Answer: A: A good alternative for RDavidWebService ??
9.5 years ago alakatos ▴ 130
0
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0
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1.8k
views
Answer: A: Package ‘GOsummaries’ --- ENTREZID does not work
9.6 years ago alakatos ▴ 130
0
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3
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1.8k
views
Package ‘GOsummaries’ --- ENTREZID does not work
GOsummaries software error
9.6 years ago alakatos ▴ 130
0
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0
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3.1k
views
Comment: C: gene expression visualization: lineplot with ggplot2
9.6 years ago alakatos ▴ 130
1
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2
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3.1k
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gene expression visualization: lineplot with ggplot2
ggplot2 lineplot visualization
updated 9.6 years ago by ▴ 180 • written 9.6 years ago by ▴ 130
0
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0
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2.5k
views
Answer: A: HUgene 2.0 analyses heatmap
9.6 years ago alakatos ▴ 130
0
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0
replies
1.9k
views
Answer: A: Annotation package built with pdInfoBuilder cannot be installed
9.7 years ago alakatos ▴ 130
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