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1
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Comment: C: Finding gene targets for a list of transcription factors
6.3 years ago alakatos ▴ 130
3
votes
4
replies
3.1k
views
Finding gene targets for a list of transcription factors
transcription factors regulatory gene network gene targets
updated 6.3 years ago by ▴ 840 • written 6.3 years ago by ▴ 130
0
votes
3
replies
1.9k
views
edgeR:fitted and partial expression values
edgeR cpm edger fitted model explained variance
updated 7.9 years ago by 53k • written 7.9 years ago by ▴ 130
0
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1
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4.9k
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Answer: A: Is Limma's removeBatchEffect() and log2() commutative?
7.9 years ago alakatos ▴ 130
0
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0
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1.9k
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Comment: C: edgeR:fitted and partial expression values
7.9 years ago alakatos ▴ 130
0
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1
reply
2.2k
views
Incorporating 'offset' into edgeR pipeline
edgeR EDASeq offset
updated 8.0 years ago by ★ 29k • written 8.0 years ago by ▴ 130
0
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0
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1.3k
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Tools for classifying reads from xenograft samples?
rnaseq xenograph
8.4 years ago alakatos ▴ 130
0
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0
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4.2k
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Comment: C: Filtering DGEList object in edgeR
8.5 years ago alakatos ▴ 130
0
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0
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4.2k
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Comment: C: Filtering DGEList object in edgeR
8.5 years ago alakatos ▴ 130
2
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4
replies
4.2k
views
Filtering DGEList object in edgeR
DGElist filter edgeR
updated 8.5 years ago by 53k • written 8.5 years ago by ▴ 130
0
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2
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7.4k
views
Comment: C: RNAseq with technical replicates: Does it sound right?
8.5 years ago alakatos ▴ 130
6
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4
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7.4k
views
RNAseq with technical replicates: Does it sound right?
rnaseq edger technical replicates
updated 8.5 years ago by ★ 7.9k • written 8.5 years ago by ▴ 130
0
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0
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2.8k
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Comment: C: RNAseq read coverage plot: What tool?
8.7 years ago alakatos ▴ 130
0
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3
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2.8k
views
RNAseq read coverage plot: What tool?
rnaseq visualization plotcoveragehist
updated 8.7 years ago by ★ 1.3k • written 8.7 years ago by ▴ 130
0
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0
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1.5k
views
Comment: C: How to transform edgeR output into a cummeRbund object?
8.7 years ago alakatos ▴ 130
1
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2
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1.5k
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How to transform edgeR output into a cummeRbund object?
edgeR cummeRbund
8.7 years ago alakatos ▴ 130
0
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0
replies
2.2k
views
Comment: C: RNA degradation plot for GeneChip Mouse Gene 2.0 ST Array
8.9 years ago alakatos ▴ 130
0
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1
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2.2k
views
Comment: C: RNA degradation plot for GeneChip Mouse Gene 2.0 ST Array
8.9 years ago alakatos ▴ 130
0
votes
8
replies
2.2k
views
RNA degradation plot for GeneChip Mouse Gene 2.0 ST Array
rnadegradationplot affymetrix mouse gene arrays
updated 8.9 years ago by 68k • written 8.9 years ago by ▴ 130
0
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0
replies
931
views
FunciSNP: an error message while running the tutorial
funcisnp software error
8.9 years ago alakatos ▴ 130
0
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0
replies
6.0k
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Comment: C: Limma: Warning Messages -- rlm -- Is there a way to fix it?
9.0 years ago alakatos ▴ 130
1
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2
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6.0k
views
Limma: Warning Messages -- rlm -- Is there a way to fix it?
limma warning message
updated 9.0 years ago by 53k • written 9.0 years ago by ▴ 130
0
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0
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2.3k
views
Comment: A: illumina gene expression array by limma
updated 9.3 years ago by 53k • written 9.3 years ago by ▴ 130
3
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2
replies
2.3k
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illumina gene expression array by limma
illumina human ht-12 v4 limma pipeline
9.3 years ago alakatos ▴ 130
0
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1
reply
2.4k
views
Mouse Transcriptome Assay 1.0 processing and annotation
annotation MTA10 array processing
updated 10.2 years ago by ▴ 40 • written 10.8 years ago by ▴ 130
2
votes
0
replies
2.4k
views
NanoString Data Normalization Revisited
nanostring normalization
10.2 years ago alakatos ▴ 130
0
votes
4
replies
4.2k
views
GEOquery: Error Message
geoquery error
updated 10.3 years ago by ▴ 10 • written 10.5 years ago by ▴ 130
0
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0
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3.7k
views
Comment: C: barplot with ggplot2 for gene expression
10.4 years ago alakatos ▴ 130
0
votes
2
replies
3.7k
views
barplot with ggplot2 for gene expression
ggplot2 barplot gene expression gene expression
updated 10.4 years ago by 68k • written 10.4 years ago by ▴ 130
0
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0
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6.3k
views
Comment: C: GEOquery: 0 features in the gset object
10.4 years ago alakatos ▴ 130
8
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4
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6.3k
views
GEOquery: 0 features in the gset object
geoquery
updated 3.1 years ago by • 0 • written 10.4 years ago by ▴ 130
0
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0
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2.6k
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Comment: C: Package "geNetClassifier": is this an "igraph' error?
10.4 years ago alakatos ▴ 130
0
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0
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2.6k
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Comment: C: Package "geNetClassifier": is this an "igraph' error?
10.4 years ago alakatos ▴ 130
0
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4
replies
2.6k
views
Package "geNetClassifier": is this an "igraph' error?
software error geNet igraph genetclassifier
updated 10.4 years ago by ▴ 20 • written 10.4 years ago by ▴ 130
0
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1
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15k
views
Comment: C: Can I feed TCGA normalized count data to EdgeR for differential gene expression
10.4 years ago alakatos ▴ 130
1
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2
replies
2.8k
views
Combining ExpressionSet objects : error with function merge() in "inSilicoMerging"
combine expresiondataset insilicomerging
10.4 years ago alakatos ▴ 130
0
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0
replies
2.8k
views
Answer: A: Combining ExpressionSet objects : error with function merge() in "inSilicoMergi
10.4 years ago alakatos ▴ 130
0
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0
replies
15k
views
Comment: C: Can I feed TCGA normalized count data to EdgeR for differential gene expression
10.5 years ago alakatos ▴ 130
0
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0
replies
4.2k
views
Answer: A: GEOquery: Error Message
10.5 years ago alakatos ▴ 130
0
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0
replies
4.6k
views
Comment: C: Mapping gene IDs to gene symbol of KEGG pathways with "Pathview"
10.5 years ago alakatos ▴ 130
0
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2
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4.6k
views
Mapping gene IDs to gene symbol of KEGG pathways with "Pathview"
Pathview KEGG annotation gene symbol visualization
updated 10.5 years ago by ★ 1.6k • written 10.5 years ago by ▴ 130
0
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0
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3.9k
views
Answer: A: A good alternative for RDavidWebService ??
10.5 years ago alakatos ▴ 130
4
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6
replies
3.9k
views
A good alternative for RDavidWebService ??
functional annotation KEGG RDavidWebService
10.6 years ago • updated 10.5 years ago alakatos ▴ 130
0
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0
replies
3.9k
views
Answer: A: A good alternative for RDavidWebService ??
10.6 years ago alakatos ▴ 130
0
votes
3
replies
2.1k
views
Package ‘GOsummaries’ --- ENTREZID does not work
GOsummaries software error
10.6 years ago alakatos ▴ 130
0
votes
0
replies
2.1k
views
Answer: A: Package ‘GOsummaries’ --- ENTREZID does not work
10.6 years ago alakatos ▴ 130
0
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0
replies
3.5k
views
Comment: C: gene expression visualization: lineplot with ggplot2
10.6 years ago alakatos ▴ 130
1
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2
replies
3.5k
views
gene expression visualization: lineplot with ggplot2
ggplot2 lineplot visualization
updated 10.6 years ago by ▴ 180 • written 10.6 years ago by ▴ 130
0
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0
replies
2.8k
views
Answer: A: HUgene 2.0 analyses heatmap
10.6 years ago alakatos ▴ 130
0
votes
5
replies
2.2k
views
Annotation package built with pdInfoBuilder cannot be installed
annotation pdinfobuilder
10.7 years ago alakatos ▴ 130
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