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Comment: C: Finding gene targets for a list of transcription factors
4.6 years ago alakatos ▴ 130
3
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4
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1.4k
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Finding gene targets for a list of transcription factors
transcription factors regulatory gene network gene targets
updated 4.6 years ago by ▴ 830 • written 4.6 years ago by ▴ 130
0
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3
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1.2k
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edgeR:fitted and partial expression values
edgeR cpm edger fitted model explained variance
updated 6.3 years ago by 50k • written 6.3 years ago by ▴ 130
0
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1
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3.7k
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Answer: A: Is Limma's removeBatchEffect() and log2() commutative?
6.3 years ago alakatos ▴ 130
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1.2k
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Comment: C: edgeR:fitted and partial expression values
6.3 years ago alakatos ▴ 130
0
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1
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1.6k
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Incorporating 'offset' into edgeR pipeline
edgeR EDASeq offset
updated 6.3 years ago by ★ 28k • written 6.3 years ago by ▴ 130
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0
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1.0k
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Tools for classifying reads from xenograft samples?
rnaseq xenograph
6.7 years ago alakatos ▴ 130
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3.2k
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Comment: C: Filtering DGEList object in edgeR
6.8 years ago alakatos ▴ 130
0
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3.2k
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Comment: C: Filtering DGEList object in edgeR
6.8 years ago alakatos ▴ 130
2
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4
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3.2k
views
Filtering DGEList object in edgeR
DGElist filter edgeR
updated 6.8 years ago by 50k • written 6.8 years ago by ▴ 130
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2
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5.7k
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Comment: C: RNAseq with technical replicates: Does it sound right?
6.8 years ago alakatos ▴ 130
6
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4
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5.7k
views
RNAseq with technical replicates: Does it sound right?
rnaseq edger technical replicates
updated 6.8 years ago by ★ 7.9k • written 6.8 years ago by ▴ 130
0
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0
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2.2k
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Comment: C: RNAseq read coverage plot: What tool?
7.0 years ago alakatos ▴ 130
0
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3
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2.2k
views
RNAseq read coverage plot: What tool?
rnaseq visualization plotcoveragehist
updated 7.0 years ago by ★ 1.3k • written 7.0 years ago by ▴ 130
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0
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1.1k
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Comment: C: How to transform edgeR output into a cummeRbund object?
7.1 years ago alakatos ▴ 130
1
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2
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1.1k
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How to transform edgeR output into a cummeRbund object?
edgeR cummeRbund
7.1 years ago alakatos ▴ 130
0
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0
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1.6k
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Comment: C: RNA degradation plot for GeneChip Mouse Gene 2.0 ST Array
7.2 years ago alakatos ▴ 130
0
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1
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1.6k
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Comment: C: RNA degradation plot for GeneChip Mouse Gene 2.0 ST Array
7.2 years ago alakatos ▴ 130
0
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8
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1.6k
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RNA degradation plot for GeneChip Mouse Gene 2.0 ST Array
rnadegradationplot affymetrix mouse gene arrays
updated 7.2 years ago by 65k • written 7.2 years ago by ▴ 130
0
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0
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726
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FunciSNP: an error message while running the tutorial
funcisnp software error
7.2 years ago alakatos ▴ 130
0
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0
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4.9k
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Comment: C: Limma: Warning Messages -- rlm -- Is there a way to fix it?
7.4 years ago alakatos ▴ 130
1
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2
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4.9k
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Limma: Warning Messages -- rlm -- Is there a way to fix it?
limma warning message
updated 7.4 years ago by 50k • written 7.4 years ago by ▴ 130
0
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0
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1.8k
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Comment: A: illumina gene expression array by limma
updated 7.7 years ago by 50k • written 7.7 years ago by ▴ 130
3
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2
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1.8k
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illumina gene expression array by limma
illumina human ht-12 v4 limma pipeline
7.7 years ago alakatos ▴ 130
0
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1
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2.0k
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Mouse Transcriptome Assay 1.0 processing and annotation
annotation MTA10 array processing
updated 8.5 years ago by ▴ 40 • written 9.1 years ago by ▴ 130
2
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0
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1.9k
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NanoString Data Normalization Revisited
nanostring normalization
8.6 years ago alakatos ▴ 130
0
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4
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3.2k
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GEOquery: Error Message
geoquery error
updated 8.7 years ago by ▴ 10 • written 8.8 years ago by ▴ 130
0
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0
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2.9k
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Comment: C: barplot with ggplot2 for gene expression
8.7 years ago alakatos ▴ 130
0
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2
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2.9k
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barplot with ggplot2 for gene expression
ggplot2 barplot gene expression gene expression
updated 8.7 years ago by 65k • written 8.7 years ago by ▴ 130
0
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0
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4.7k
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Comment: C: GEOquery: 0 features in the gset object
8.7 years ago alakatos ▴ 130
8
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4
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4.7k
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GEOquery: 0 features in the gset object
geoquery
updated 17 months ago by • 0 • written 8.7 years ago by ▴ 130
0
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0
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2.0k
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Comment: C: Package "geNetClassifier": is this an "igraph' error?
8.7 years ago alakatos ▴ 130
0
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0
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2.0k
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Comment: C: Package "geNetClassifier": is this an "igraph' error?
8.7 years ago alakatos ▴ 130
0
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4
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2.0k
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Package "geNetClassifier": is this an "igraph' error?
software error geNet igraph genetclassifier
updated 8.7 years ago by ▴ 20 • written 8.7 years ago by ▴ 130
0
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1
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14k
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Comment: C: Can I feed TCGA normalized count data to EdgeR for differential gene expression
8.8 years ago alakatos ▴ 130
0
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0
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2.3k
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Answer: A: Combining ExpressionSet objects : error with function merge() in "inSilicoMergi
8.8 years ago alakatos ▴ 130
1
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2
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2.3k
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Combining ExpressionSet objects : error with function merge() in "inSilicoMerging"
combine expresiondataset insilicomerging
8.8 years ago alakatos ▴ 130
0
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0
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14k
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Comment: C: Can I feed TCGA normalized count data to EdgeR for differential gene expression
8.8 years ago alakatos ▴ 130
0
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0
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3.2k
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Answer: A: GEOquery: Error Message
8.8 years ago alakatos ▴ 130
0
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0
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3.4k
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Comment: C: Mapping gene IDs to gene symbol of KEGG pathways with "Pathview"
8.9 years ago alakatos ▴ 130
0
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2
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3.4k
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Mapping gene IDs to gene symbol of KEGG pathways with "Pathview"
Pathview KEGG annotation gene symbol visualization
updated 8.9 years ago by ★ 1.6k • written 8.9 years ago by ▴ 130
0
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0
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3.1k
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Answer: A: A good alternative for RDavidWebService ??
8.9 years ago alakatos ▴ 130
4
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6
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3.1k
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A good alternative for RDavidWebService ??
functional annotation KEGG RDavidWebService
8.9 years ago alakatos ▴ 130
0
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0
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3.1k
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Answer: A: A good alternative for RDavidWebService ??
8.9 years ago alakatos ▴ 130
0
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0
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1.6k
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Answer: A: Package ‘GOsummaries’ --- ENTREZID does not work
8.9 years ago alakatos ▴ 130
0
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3
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1.6k
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Package ‘GOsummaries’ --- ENTREZID does not work
GOsummaries software error
8.9 years ago alakatos ▴ 130
0
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0
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2.7k
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Comment: C: gene expression visualization: lineplot with ggplot2
8.9 years ago alakatos ▴ 130
1
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2
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2.7k
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gene expression visualization: lineplot with ggplot2
ggplot2 lineplot visualization
updated 8.9 years ago by ▴ 180 • written 8.9 years ago by ▴ 130
0
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0
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2.3k
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Answer: A: HUgene 2.0 analyses heatmap
8.9 years ago alakatos ▴ 130
0
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0
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1.7k
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Answer: A: Annotation package built with pdInfoBuilder cannot be installed
9.1 years ago alakatos ▴ 130
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