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Comment: C: Error and weird result of TCGAanalyze_Normalization function using the R package
7.0 years ago svlachavas ▴ 830
6
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11
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3.5k
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Error and weird result of TCGAanalyze_Normalization function using the R package TCGAbiolinks for normalization of raw HTSeq counts
tcgabiolinks rnaseq normalization EDASeq
updated 7.0 years ago by ▴ 50 • written 7.0 years ago by ▴ 830
0
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0
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1.5k
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Specific considerations in RNA-Seq DE analysis with edgeR pipeline for a TCGA dataset starting with HTSeq counts
edgeR rnaseq DEanalysis TCGA independent filtering
7.0 years ago svlachavas ▴ 830
0
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0
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3.5k
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Comment: C: Error and weird result of TCGAanalyze_Normalization function using the R package
7.0 years ago svlachavas ▴ 830
0
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1
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3.5k
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Comment: C: Error and weird result of TCGAanalyze_Normalization function using the R package
7.0 years ago svlachavas ▴ 830
0
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0
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3.5k
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Comment: C: Error and weird result of TCGAanalyze_Normalization function using the R package
7.0 years ago svlachavas ▴ 830
0
votes
1
reply
3.5k
views
Comment: C: Error and weird result of TCGAanalyze_Normalization function using the R package
7.0 years ago svlachavas ▴ 830
0
votes
1
reply
3.5k
views
Comment: C: Error and weird result of TCGAanalyze_Normalization function using the R package
7.0 years ago svlachavas ▴ 830
1
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1
reply
2.5k
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Answer: A: Gene level analysis of Affymetrix GeneChip Mouse Exon Arrays
7.4 years ago svlachavas ▴ 830
0
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0
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963
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Comment: C: pathway / net-work base analysis with somatic mutations
7.5 years ago svlachavas ▴ 830
1
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2
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4.8k
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Answer: A: Alternative packages to limma for analysis of microarray datasets
7.5 years ago svlachavas ▴ 830
0
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1
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12k
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Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
7.5 years ago svlachavas ▴ 830
0
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0
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1.2k
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Possible confounding of variable of interest with batch covariate and Partial NA coefficients when including batch in limma linear model for microarr…
limma batch effect design matrix microarray confounding
7.6 years ago svlachavas ▴ 830
0
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0
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1.1k
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Answer: A: RNA seq data
7.6 years ago svlachavas ▴ 830
2
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1
reply
1.5k
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Answer: A: fdr score for degs
7.6 years ago svlachavas ▴ 830
1
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0
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3.5k
views
Answer: A: Meaning of multiple coef in topTable, limma.
7.6 years ago svlachavas ▴ 830
0
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2
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1.7k
views
Answer: A: Search for Drugs related to results of differential expression analysis using RN
7.6 years ago svlachavas ▴ 830
0
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0
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1.4k
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Putative batch effect assessment and correction for downstream DE analysis with microarray dataset
hta2.0 limma batch effect affymetrix microarrays ComBat
7.6 years ago svlachavas ▴ 830
0
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0
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1.8k
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Comment: C: Problem with GEOquery R package in Windows when trying to download specific GEO
7.6 years ago svlachavas ▴ 830
2
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2
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1.8k
views
Problem with GEOquery R package in Windows when trying to download specific GEO processed data
geoquery affymetrix microarrays windows8 getGEO
updated 7.6 years ago by 21k • written 7.6 years ago by ▴ 830
0
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1
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1.7k
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Comment: C: Problem with memory limit in Rstudio/Windows when importing Affymetrix HTA 2.0 C
7.6 years ago svlachavas ▴ 830
2
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3
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1.7k
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Problem with memory limit in Rstudio/Windows when importing Affymetrix HTA 2.0 CEL files with oligo R package
oligo hta2.0 affymetrix microarrays memory problem
updated 7.6 years ago by 67k • written 7.6 years ago by ▴ 830
0
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1
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3.6k
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Comment: C: Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with o
7.6 years ago svlachavas ▴ 830
6
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7
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3.6k
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Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with oligo for DE analysis
oligo affycoretools hta2.0 affymetrix
updated 2.5 years ago by ▴ 10 • written 7.6 years ago by ▴ 830
3
votes
1
reply
10k
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Error using function NbClust regarding multiple values in the argument "index" of package NbClust for getting the optimal number of clusters of a dat…
NbClust clustering looping list object function creation
updated 7.7 years ago by ▴ 20 • written 9.2 years ago by ▴ 830
0
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0
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1.5k
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Comment: C: Possible approach of compare/interpret RNA-Seq results with microarray gene expr
7.8 years ago svlachavas ▴ 830
1
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0
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4.6k
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Answer: A: illumina ht-12 v4 expression beadchip
7.8 years ago svlachavas ▴ 830
0
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0
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1.7k
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Comment: C: Appropriate design matrix set up in limma for 2-factor approches with NA values
7.8 years ago svlachavas ▴ 830
0
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1
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1.7k
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Comment: C: Appropriate design matrix set up in limma for 2-factor approches with NA values
7.8 years ago svlachavas ▴ 830
3
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4
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1.7k
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Appropriate design matrix set up in limma for 2-factor approches with NA values for specific levels
limma multiple factor design NA values design and contrast matrix
updated 7.8 years ago by 51k • written 7.8 years ago by ▴ 830
0
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2
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12k
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Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
7.8 years ago svlachavas ▴ 830
0
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0
replies
1.8k
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Comment: C: Weird error with raw data using function boxplot after importing Affymetrix Huma
7.8 years ago svlachavas ▴ 830
0
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1
reply
1.8k
views
Comment: C: Weird error with raw data using function boxplot after importing Affymetrix Huma
7.8 years ago svlachavas ▴ 830
6
votes
4
replies
1.8k
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Weird error with raw data using function boxplot after importing Affymetrix Human ST 2.0 CEL files with oligo
microarray affymetrix Human ST arrays oligo hugene20sttranscriptcluster.db
updated 7.8 years ago by 67k • written 7.8 years ago by ▴ 830
0
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0
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1.5k
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Comment: C: Possible approach of compare/interpret RNA-Seq results with microarray gene expr
7.8 years ago svlachavas ▴ 830
0
votes
1
reply
1.5k
views
Comment: C: Possible approach of compare/interpret RNA-Seq results with microarray gene expr
7.8 years ago svlachavas ▴ 830
3
votes
6
replies
1.5k
views
Possible approach of compare/interpret RNA-Seq results with microarray gene expression describing the same phenotype
microarray rnaseq DEgenes meta-analysis limma
updated 7.8 years ago by ★ 28k • written 7.8 years ago by ▴ 830
0
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0
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1.4k
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Answer: A: single probe represent multiple genes?
7.8 years ago svlachavas ▴ 830
0
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1
reply
1.3k
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Answer: A: coef for limma differential expression analysis
7.8 years ago svlachavas ▴ 830
2
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0
replies
778
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Answer: A: Can someone give me a quick how-to differential expression analyze a microarray
7.8 years ago svlachavas ▴ 830
0
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0
replies
4.2k
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Comment: C: Preprocessing of Human Gene 2.0 ST microarrays with oligo R package and annotati
7.8 years ago svlachavas ▴ 830
0
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1
reply
4.2k
views
Comment: C: Preprocessing of Human Gene 2.0 ST microarrays with oligo R package and annotati
7.8 years ago svlachavas ▴ 830
9
votes
6
replies
4.2k
views
Preprocessing of Human Gene 2.0 ST microarrays with oligo R package and annotation options
microarray oligo affycoretools pd.hugene.2.0.st hugene20sttranscriptcluster.db
updated 7.8 years ago by 67k • written 7.8 years ago by ▴ 830
0
votes
0
replies
12k
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Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
7.9 years ago svlachavas ▴ 830
0
votes
1
reply
12k
views
Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
7.9 years ago svlachavas ▴ 830
0
votes
1
reply
12k
views
Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
7.9 years ago svlachavas ▴ 830
0
votes
1
reply
12k
views
Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
7.9 years ago svlachavas ▴ 830
0
votes
1
reply
12k
views
Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
7.9 years ago svlachavas ▴ 830
25
votes
37
replies
12k
views
Possible ways of performing differential gene expression and analysis of RNA-Seq data from normalized counts of RSEM software
rnaseq RSEM TCGA edgeR normalization
updated 7.9 years ago by 51k • written 7.9 years ago by ▴ 830
1
vote
2
replies
12k
views
Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
7.9 years ago svlachavas ▴ 830
532 results • Page 3 of 11
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