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0
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0
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2.0k
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Comment: C: remove NA's from a DelayedArray
8.3 years ago maltethodberg ▴ 180
0
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0
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1.6k
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Comment: C: Passing multiple arguments (like mapply) to the MAP-function in GenomicFiles.
8.3 years ago maltethodberg ▴ 180
4
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4
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2.0k
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remove NA's from a DelayedArray
delayedarray
updated 8.3 years ago by 16k • written 8.3 years ago by ▴ 180
3
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2
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1.6k
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Passing multiple arguments (like mapply) to the MAP-function in GenomicFiles.
genomicfiles reduceByRange
updated 8.3 years ago by ★ 6.8k • written 8.3 years ago by ▴ 180
0
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1
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4.1k
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Comment: C: Getting errors with makeTxDbFromBiomart
8.4 years ago maltethodberg ▴ 180
0
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0
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894
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Parallel version of viewApply?
viewApply biocparallel
8.7 years ago maltethodberg ▴ 180
0
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0
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897
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Gviz: Plot features with thin and thick lines
gviz
8.8 years ago maltethodberg ▴ 180
1
vote
1
reply
1.9k
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sva: Parallel execution of sva()-function fails.
sva parallel
updated 8.9 years ago by 25k • written 8.9 years ago by ▴ 180
0
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1
reply
1.5k
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Replacing values in an RleList
rlelist ifelse
updated 9.0 years ago by ▴ 10 • written 9.0 years ago by ▴ 180
0
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1
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5.1k
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Comment: C: DE for genes with very low counts using limma.
9.2 years ago maltethodberg ▴ 180
0
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1
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5.1k
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Comment: C: DE for genes with very low counts using limma.
9.2 years ago maltethodberg ▴ 180
0
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0
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5.1k
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Comment: C: DE for genes with very low counts using limma.
9.2 years ago maltethodberg ▴ 180
10
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13
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5.1k
views
DE for genes with very low counts using limma.
limma voom limma-trend
updated 9.2 years ago by 53k • written 9.2 years ago by ▴ 180
0
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0
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5.1k
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Comment: C: DE for genes with very low counts using limma.
9.2 years ago maltethodberg ▴ 180
0
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1
reply
1.7k
views
Comment: C: Design matrix and contrast for RNA knockdown experiment
9.2 years ago maltethodberg ▴ 180
0
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1
reply
1.7k
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Comment: C: Design matrix and contrast for RNA knockdown experiment
9.2 years ago maltethodberg ▴ 180
0
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1
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1.7k
views
Comment: C: Design matrix and contrast for RNA knockdown experiment
9.2 years ago maltethodberg ▴ 180
4
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7
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1.7k
views
Design matrix and contrast for RNA knockdown experiment
design matrix limma contrast matrix
updated 9.2 years ago by ★ 29k • written 9.2 years ago by ▴ 180
3
votes
2
replies
1.4k
views
does import.bw with the selection argument take into account strand?
rtracklayer import.bw
updated 9.2 years ago by ★ 11k • written 9.3 years ago by ▴ 180
0
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0
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1.5k
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Comment: C: countOverlaps with weights
9.3 years ago maltethodberg ▴ 180
5
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3
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1.5k
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countOverlaps with weights
genomicranges countoverlaps
updated 9.3 years ago by 25k • written 9.3 years ago by ▴ 180
0
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1
reply
2.1k
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Comment: C: limma: genas + arrayweights = OK?
updated 9.3 years ago by 53k • written 9.3 years ago by ▴ 180
0
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1
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4.2k
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Comment: C: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho
9.4 years ago maltethodberg ▴ 180
1
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1
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4.2k
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Comment: C: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho
9.4 years ago maltethodberg ▴ 180
16
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6
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4.2k
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Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE methods?
edgeR limma diffSplice DEXSeq
updated 9.4 years ago by ▴ 90 • written 9.4 years ago by ▴ 180
0
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1
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5.7k
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Comment: C: Filtering lowly expressed genes in voom-limma analysis
9.4 years ago maltethodberg ▴ 180
0
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0
replies
3.3k
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Comment: C: overlapsAny for elements in GRangesList
9.7 years ago maltethodberg ▴ 180
6
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10
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3.3k
views
overlapsAny for elements in GRangesList
granges grangeslist overlapsAny
updated 20 months ago by • 0 • written 9.7 years ago by ▴ 180
0
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0
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3.3k
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Comment: C: overlapsAny for elements in GRangesList
9.7 years ago maltethodberg ▴ 180
0
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1
reply
3.3k
views
Comment: C: overlapsAny for elements in GRangesList
9.7 years ago maltethodberg ▴ 180
0
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1
reply
9.0k
views
Comment: C: Correct sequence of functions for edgeR, edgeR robust and edgeR QL.
9.8 years ago maltethodberg ▴ 180
20
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10
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9.0k
views
Correct sequence of functions for edgeR, edgeR robust and edgeR QL.
edger estimatedispersions glm
updated 9.8 years ago by 53k • written 9.8 years ago by ▴ 180
0
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1
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9.0k
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Comment: C: Correct sequence of functions for edgeR, edgeR robust and edgeR QL.
9.8 years ago maltethodberg ▴ 180
0
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1
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7.1k
views
Comment: C: Differences between edgeR's and limma+voom's implementation of camera/roast/rome
9.9 years ago maltethodberg ▴ 180
8
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4
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7.1k
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Differences between edgeR's and limma+voom's implementation of camera/roast/romer
limma edger mroast romer camera
updated 9.9 years ago by ★ 13k • written 9.9 years ago by ▴ 180
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