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4
votes
2
replies
577
views
Parallel comparison of two DNAString objects with IUPAC ambiguities
Biostrings
written 4 months ago by ▴ 180
0
votes
1
reply
411
views
Is random access by row index possible for an indexed VCF file?
Rsamtools VariantAnnotation
updated 8 months ago by 67k • written 8 months ago by ▴ 180
1
vote
5
replies
1.9k
views
rowsum or similar for RleArray?
delayedarray rowsum
written 7.2 years ago by ▴ 180
0
votes
0
replies
1.4k
views
Comment: Comment: Unique GPos taking into account mcols
3.2 years ago maltethodberg ▴ 180
0
votes
1
reply
1.4k
views
Comment: Comment: Unique GPos taking into account mcols
3.3 years ago maltethodberg ▴ 180
2
votes
4
replies
1.4k
views
Unique GPos taking into account mcols
GenomicRanges unique GPos
3.3 years ago • updated 3.2 years ago maltethodberg ▴ 180
0
votes
0
replies
679
views
Comment: C: CAGEfightR - error message at TSSs
4.2 years ago maltethodberg ▴ 180
0
votes
0
replies
1.9k
views
Comment: C: CAGEfightR quickTSSs(CTSSs) output Error in stop_if_wrong_length("'seqnames'", a
4.5 years ago maltethodberg ▴ 180
0
votes
0
replies
1.3k
views
Comment: C: EBImage: Annotate multiple images in a grid with display()?
4.6 years ago maltethodberg ▴ 180
3
votes
2
replies
1.3k
views
EBImage: Annotate multiple images in a grid with display()?
EBImage display
updated 4.6 years ago by ▴ 750 • written 4.6 years ago by ▴ 180
0
votes
0
replies
1.2k
views
Comment: C: GenomicRanges: Find N nearest/preceding/following ranges
4.8 years ago maltethodberg ▴ 180
0
votes
0
replies
612
views
Comment: C: CAGEfightR , quickEnhancers
4.8 years ago maltethodberg ▴ 180
3
votes
2
replies
1.2k
views
GenomicRanges: Find N nearest/preceding/following ranges
genomicranges
updated 4.8 years ago by ★ 11k • written 4.8 years ago by ▴ 180
1
vote
1
reply
959
views
Checking if to DataFrames are identical
S4Vectors DataFrame
5.2 years ago maltethodberg ▴ 180
2
votes
1
reply
1.0k
views
Answer: A: Genome database and transcription database have different lengths
5.3 years ago maltethodberg ▴ 180
4
votes
2
replies
1.2k
views
Build GPos from IPos
genomicranges granges gpos
updated 5.4 years ago by 16k • written 6.2 years ago by ▴ 180
0
votes
0
replies
894
views
Comment: C: CAGEFightR to get CTSS from CAGE error
5.5 years ago maltethodberg ▴ 180
0
votes
0
replies
1.1k
views
Comment: C: Adding a legend to a GeneRegionTrack?
5.6 years ago maltethodberg ▴ 180
4
votes
1
reply
1.3k
views
What's the recommended way to overwrite the seqinfo of a GRanges?
GRanges seqinfo import.bw BigWigFile rtracklayer
updated 5.7 years ago by ★ 11k • written 5.7 years ago by ▴ 180
0
votes
2
replies
1.1k
views
Adding a legend to a GeneRegionTrack?
Gviz GeneRegionTrack
5.7 years ago maltethodberg ▴ 180
0
votes
1
reply
1.5k
views
Comment: C: Correct use of Nested/Stage-wise testing with limma/stageR for 3-group design.
5.8 years ago maltethodberg ▴ 180
4
votes
4
replies
1.5k
views
Correct use of Nested/Stage-wise testing with limma/stageR for 3-group design.
limma stageR decideTests
updated 5.8 years ago by ▴ 180 • written 5.8 years ago by ▴ 180
0
votes
1
reply
1.3k
views
Comment: C: Best way of creating a large RleMatrix
5.9 years ago maltethodberg ▴ 180
4
votes
3
replies
1.3k
views
Best way of creating a large RleMatrix
DelayedArray RleMatrix
updated 5.9 years ago by 16k • written 6.0 years ago by ▴ 180
0
votes
1
reply
2.8k
views
Comment: C: bplapply with progressbar
6.0 years ago maltethodberg ▴ 180
0
votes
1
reply
1.9k
views
Comment: C: DelayedArray seeds: SolidRleArraySeed vs ChunkedRleArraySeed vs DataFrame of Rle
6.1 years ago maltethodberg ▴ 180
0
votes
1
reply
1.9k
views
Comment: C: DelayedArray seeds: SolidRleArraySeed vs ChunkedRleArraySeed vs DataFrame of Rle
6.1 years ago maltethodberg ▴ 180
8
votes
8
replies
1.9k
views
DelayedArray seeds: SolidRleArraySeed vs ChunkedRleArraySeed vs DataFrame of Rle's
delayedarray delayedmatrixstats
updated 6.1 years ago by ▴ 740 • written 6.1 years ago by ▴ 180
0
votes
1
reply
1.9k
views
Comment: C: Calling coverage on GRanges object yields small negative values
6.1 years ago maltethodberg ▴ 180
2
votes
1
reply
1.2k
views
Intra-range transformation on GPos-objects?
genomicranges gpos granges
updated 6.1 years ago by 16k • written 6.2 years ago by ▴ 180
0
votes
0
replies
925
views
Plotting bed8 with Sushi possible?
sushi bed
6.2 years ago maltethodberg ▴ 180
0
votes
2
replies
1.1k
views
mroast/fry with gene weights for most or all genes
limma mroast fry
updated 6.2 years ago by 51k • written 6.2 years ago by ▴ 180
4
votes
2
replies
1.1k
views
bpaggregate with formula returns strange error message
biocparallel bpaggregate aggregate
updated 6.4 years ago by 25k • written 6.4 years ago by ▴ 180
5
votes
1
reply
919
views
edgeR normalisation factors different between experimental groups
edger
updated 6.6 years ago by ★ 28k • written 6.6 years ago by ▴ 180
0
votes
1
reply
1.4k
views
Comment: C: Future plans for the new GPos class
6.6 years ago maltethodberg ▴ 180
3
votes
4
replies
1.4k
views
Future plans for the new GPos class
genomicranges gpos
updated 6.8 years ago by 16k • written 6.9 years ago by ▴ 180
0
votes
0
replies
912
views
coverage no longer works on GPos objects?
genomicranges gpos
6.9 years ago maltethodberg ▴ 180
0
votes
1
reply
1.7k
views
Comment: C: breakTies for a Hits-object based on value in mcols?
6.9 years ago maltethodberg ▴ 180
0
votes
1
reply
1.7k
views
Comment: C: breakTies for a Hits-object based on value in mcols?
6.9 years ago maltethodberg ▴ 180
4
votes
6
replies
1.7k
views
breakTies for a Hits-object based on value in mcols?
s4vectors hits
updated 6.9 years ago by ★ 11k • written 6.9 years ago by ▴ 180
0
votes
0
replies
789
views
interGeneCorrelation and voom
voom interGeneCorrelation limma
7.0 years ago maltethodberg ▴ 180
0
votes
0
replies
2.4k
views
Comment: C: limma-trend with random effects and/or array weights
7.1 years ago maltethodberg ▴ 180
0
votes
1
reply
1.8k
views
Comment: C: Implementing fast mathematical and statistical operations on genomic variables i
7.1 years ago maltethodberg ▴ 180
0
votes
0
replies
1.7k
views
Comment: C: Plans for multicore block processing in DelayedArray?
7.1 years ago maltethodberg ▴ 180
0
votes
1
reply
1.7k
views
Comment: C: Plans for multicore block processing in DelayedArray?
7.2 years ago maltethodberg ▴ 180
0
votes
1
reply
1.7k
views
Comment: C: Plans for multicore block processing in DelayedArray?
7.2 years ago maltethodberg ▴ 180
2
votes
6
replies
1.7k
views
Plans for multicore block processing in DelayedArray?
delayedarray
updated 7.2 years ago by 16k • written 7.2 years ago by ▴ 180
10
votes
4
replies
2.4k
views
limma-trend with random effects and/or array weights
limma-trend duplicatecorrelation arrayweights limma
updated 7.2 years ago by 51k • written 7.2 years ago by ▴ 180
0
votes
0
replies
1.6k
views
Comment: C: remove NA's from a DelayedArray
7.2 years ago maltethodberg ▴ 180
0
votes
0
replies
1.2k
views
Comment: C: Passing multiple arguments (like mapply) to the MAP-function in GenomicFiles.
7.2 years ago maltethodberg ▴ 180
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