0
votes
3
replies
1.9k
views
XPS package QC data
affy arrayQualityMetrics xps affy arrayQualityMetrics xps
updated 12.4 years ago by ★ 3.9k • written 12.4 years ago by ▴ 40
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0
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Opportunity at the Laboratory for Personalized Medicine with Harvard Medical School
12.4 years ago Doe, Aimee ▴ 40
0
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9
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2.8k
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RNA degradation plot with oligo package GeneFeatureSet objects
affy oligo affy oligo
updated 12.4 years ago by 68k • written 12.4 years ago by ▴ 360
0
votes
3
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MEDIPS, GRanges, IRanges error processing BAM file
Alignment BSgenome PROcess BSgenome IRanges MEDIPS Alignment BSgenome PROcess BSgenome
updated 12.4 years ago by ▴ 570 • written 12.4 years ago by ▴ 40
0
votes
1
reply
898
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RMA probe summarization when sizes of probesets are unequal
Microarray Normalization probe oligo Microarray Normalization probe oligo
updated 12.4 years ago by 68k • written 12.4 years ago by ★ 13k
1
vote
3
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3.2k
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Problem with RIPSeeker
biomaRt RIPSeeker biomaRt RIPSeeker
updated 12.4 years ago by ▴ 510 • written 12.4 years ago by ▴ 30
0
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0
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1.1k
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Connectionists: Open position for an Experienced Researcher at Johannes Kepler University Linz, Austria
Coverage PROcess Coverage PROcess
12.4 years ago Secretary Institute of Bioinformatics ▴ 20
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Open position for an Experienced Researcher at Johannes Kepler University Linz, Austria
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12.4 years ago Secretary Institute of Bioinformatics ▴ 20
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4
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Pathview for global and overview maps Re: using pathview about hsa01100
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updated 12.4 years ago by ▴ 230 • written 12.4 years ago by ★ 1.6k
0
votes
2
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MEDIPS no longer producing AMS values
Sequencing MEDIPS Sequencing MEDIPS
updated 12.4 years ago by ▴ 570 • written 12.4 years ago by ▴ 40
0
votes
5
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2.8k
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problem generating Chinese hamster txdb from GFF file
GO GenomicFeatures GO GenomicFeatures
updated 4 months ago by • 0 • written 12.4 years ago by ★ 4.1k
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votes
3
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Diffbind: Binding Affinity Heatmap
Sequencing GO Clustering GLAD edgeR DESeq DiffBind Sequencing GO Clustering GLAD edgeR
12.4 years ago Rory Stark ★ 5.2k
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reply
3.0k
views
Problem with importing bigWig file from GEO with rtracklayer?
rtracklayer rtracklayer
updated 12.4 years ago by ★ 1.6k • written 12.4 years ago by ▴ 260
0
votes
4
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Phred encoding
updated 12.4 years ago by 6.7k • written 12.4 years ago by ▴ 250
0
votes
1
reply
1.7k
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SKAT package on CRAN
updated 12.4 years ago by ★ 8.2k • written 12.4 years ago by ▴ 40
0
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2
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DESeq2 dependency hell
DESeq2 DESeq2
updated 12.4 years ago by 68k • written 12.4 years ago by ★ 13k
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4
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1.5k
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I need BSgenome for Eucalyptus grandis
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updated 12.4 years ago by ★ 7.2k • written 12.4 years ago by ★ 13k
0
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views
SVA package error message: Error in diag(dims[2]) - mod %*% solve(t(mod) %*% mod) %*% t(mod) : non-conformable arrays
sva sva
12.4 years ago Ying Chen ▴ 110
2
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1
reply
1.0k
views
returning an objects GLCM using EBImage
updated 12.4 years ago by ▴ 60 • written 12.4 years ago by ▴ 20
0
votes
1
reply
1.5k
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Matrix package bug?
updated 12.4 years ago by 25k • written 12.4 years ago by ▴ 200
0
votes
4
replies
22k
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Unable to find an inherited method for function ‘exprs’
Biobase GEOquery virtualArray Biobase GEOquery virtualArray
updated 12.4 years ago by ★ 13k • written 12.4 years ago by ▴ 210
0
votes
1
reply
794
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edgeR v2.6 vs. v3.2.4
edgeR edgeR
updated 12.4 years ago by ★ 7.9k • written 12.4 years ago by ★ 13k
0
votes
8
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3.3k
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Affy: probeset to gene expression with expresso
probe affy probe affy
updated 12.4 years ago by 68k • written 12.4 years ago by ▴ 50
0
votes
3
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1.4k
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BUG? when setting mcols of a GRanges to a DataFrame one of whose columns is an ordered factor
updated 12.4 years ago by 16k • written 12.4 years ago by ★ 1.6k
0
votes
2
replies
1.5k
views
take the average log fc for each gene
updated 12.4 years ago by 68k • written 12.4 years ago by ▴ 100
0
votes
1
reply
1.3k
views
defining accessors (cols, keys, keytypes, select) for annotation package built with AnnotationForge package
Annotation Organism AnnotationDbi Annotation Organism AnnotationDbi
updated 12.4 years ago by ★ 7.2k • written 12.4 years ago by ▴ 30
0
votes
0
replies
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topgo GO mapping for non model organisms
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12.4 years ago km ▴ 100
0
votes
2
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GViz - successes and a few hopes
annotate Gviz annotate Gviz
updated 12.4 years ago by ★ 1.6k • written 12.4 years ago by ★ 1.6k
6
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3
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ComBat: Could it utilize technical replicates?
updated 12.4 years ago by ▴ 870 • written 12.4 years ago by ▴ 50
0
votes
2
replies
4.5k
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TranscriptDb of GENCODE Genes
Transcription Annotation Transcription Annotation
updated 12.4 years ago by ★ 7.2k • written 12.4 years ago by ★ 1.6k
0
votes
1
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1.8k
views
cummeRbund installation Error
cummeRbund cummeRbund
updated 12.4 years ago by ★ 8.2k • written 12.4 years ago by ▴ 10
0
votes
12
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combining/merging several ExpressionSet objects from SCAN
updated 12.4 years ago by ▴ 870 • written 12.4 years ago by ▴ 360
0
votes
0
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Reopening of Computational Biologist position at Genentech
Infrastructure PROcess Infrastructure PROcess
12.4 years ago Michael Lawrence ★ 11k
1
vote
4
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[topGO] More flexible way to select 'interesting' genes
GO probe topGO GO probe topGO
updated 12.4 years ago by ▴ 400 • written 12.4 years ago by ▴ 680
0
votes
5
replies
1.5k
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Measuring shifts in intronic expression independently of exons
updated 12.4 years ago by ★ 13k • written 12.4 years ago by ▴ 120
0
votes
4
replies
4.9k
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Limma, model with several factors
limma limma
updated 12.4 years ago by 53k • written 12.4 years ago by ★ 2.0k
0
votes
1
reply
2.6k
views
GWASTools
cdf GWASTools cdf GWASTools
12.4 years ago Stephanie M. Gogarten ▴ 890
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votes
2
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1.4k
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*Ranges paper published
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updated 12.4 years ago by ★ 4.2k • written 12.4 years ago by ★ 11k
0
votes
1
reply
1.3k
views
beadarray library: perBeadFile
GLAD beadarray GLAD beadarray
updated 12.4 years ago by ★ 6.6k • written 12.4 years ago by ▴ 10
0
votes
0
replies
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bioMart GO inconsistency, normal?
GO biomaRt GO biomaRt
12.4 years ago R Tagett ▴ 30
0
votes
1
reply
1.2k
views
FW: DWD method for batch effect removal
updated 12.4 years ago by ★ 8.2k • written 12.4 years ago by ▴ 100
0
votes
0
replies
1.4k
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回复: Re: fRMA package
affxparser frma GenomicRanges affxparser frma GenomicRanges
12.4 years ago Hanyine ▴ 30
0
votes
4
replies
1.8k
views
IRanges::unlist in package
rtracklayer IRanges GenomicFeatures Rsamtools rtracklayer IRanges GenomicFeatures Rsamtools
updated 12.4 years ago by 68k • written 12.4 years ago by ▴ 220
0
votes
0
replies
814
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R package cleanUpdTSeq
GO GO
12.4 years ago Ou, Jianhong ★ 1.3k
0
votes
1
reply
1.3k
views
basic query to make groups ..
updated 12.4 years ago by ▴ 200 • written 12.4 years ago by ▴ 170
0
votes
2
replies
2.4k
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Gviz ideogram error
ideogram Gviz ideogram Gviz
updated 12.4 years ago by ★ 13k • written 12.4 years ago by ▴ 10
0
votes
0
replies
1.6k
views
FW: fRMA package
affxparser frma GenomicRanges affxparser frma GenomicRanges
12.4 years ago Li Liu ▴ 100
0
votes
3
replies
1.5k
views
GenomicRanges::reduce feature request
updated 12.4 years ago by ★ 11k • written 12.4 years ago by ★ 4.3k
0
votes
6
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3.0k
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DWD method for batch effect removal
inSilicoMerging inSilicoMerging
updated 12.4 years ago by ★ 8.2k • written 12.4 years ago by ▴ 100
0
votes
6
replies
2.0k
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fRMA package
updated 12.4 years ago by ★ 8.2k • written 12.4 years ago by ▴ 100
46,699 results • Page 530 of 934
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