0
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1
reply
1.3k
views
beadarray library: perBeadFile
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updated 12.4 years ago by ★ 6.6k • written 12.4 years ago by ▴ 10
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12.4 years ago R Tagett ▴ 30
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1
reply
1.2k
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FW: DWD method for batch effect removal
updated 12.4 years ago by ★ 8.2k • written 12.4 years ago by ▴ 100
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回复: Re: fRMA package
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12.4 years ago Hanyine ▴ 30
0
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4
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IRanges::unlist in package
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updated 12.4 years ago by 68k • written 12.4 years ago by ▴ 220
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R package cleanUpdTSeq
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12.4 years ago Ou, Jianhong ★ 1.3k
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1
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basic query to make groups ..
updated 12.4 years ago by ▴ 200 • written 12.4 years ago by ▴ 170
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updated 12.4 years ago by ★ 13k • written 12.4 years ago by ▴ 10
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FW: fRMA package
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12.4 years ago Li Liu ▴ 100
0
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GenomicRanges::reduce feature request
updated 12.4 years ago by ★ 11k • written 12.4 years ago by ★ 4.3k
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6
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DWD method for batch effect removal
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updated 12.4 years ago by ★ 8.2k • written 12.4 years ago by ▴ 100
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6
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fRMA package
updated 12.4 years ago by ★ 8.2k • written 12.4 years ago by ▴ 100
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request
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12.4 years ago Alexey Moskalev ▴ 30
0
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2
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Limma\'s roast() does not accept weigths in combination with block
updated 12.4 years ago by 53k • written 12.4 years ago by ★ 13k
0
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1
reply
1.5k
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答复: an error in AnnotationForge
Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy
12.4 years ago joseph ▴ 50
0
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2
replies
1.2k
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DNAStringSetList can't coerce a list?
Cancer Cancer
12.4 years ago Taylor, Sean D ▴ 250
0
votes
2
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Extracting overlapping gene names from a list of peaks
ChIPSeq chipseq ChIPSeq chipseq
updated 12.4 years ago by ★ 11k • written 12.4 years ago by ▴ 20
0
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0
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974
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HTqPCR problem with ttestCtData function
Normalization Normalization
12.4 years ago Ruben Dries ▴ 10
0
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3
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ggbio facet_gr example sought
updated 12.4 years ago by ★ 11k • written 12.4 years ago by ★ 1.6k
0
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2
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1.1k
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ggbio: Data stored twice in 'GGbio' object
updated 12.4 years ago by ★ 11k • written 12.4 years ago by ★ 1.3k
0
votes
3
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3.0k
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XCMS query regarding mzXML
xcms xcms
updated 12.4 years ago by 1.6k • written 12.4 years ago by ▴ 570
0
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2
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EdgeR: general advice on using edgeR for sRNA analysis
Normalization edgeR Normalization edgeR
updated 12.4 years ago by 53k • written 12.4 years ago by ▴ 30
0
votes
0
replies
1.5k
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CGHCall problems
aCGH probe DNAcopy aCGH CGHcall aCGH probe DNAcopy aCGH CGHcall
12.4 years ago Guest User ★ 13k
0
votes
0
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946
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topGO question
topGO topGO
12.4 years ago Datong Wang ▴ 10
0
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1
reply
1.1k
views
[devteam-bioc] Failure to update to Bioconductor 2.12 from bioconductor 2.11
updated 12.4 years ago by ▴ 10 • written 12.4 years ago by ★ 8.2k
0
votes
1
reply
1.5k
views
Error in .testGOFrame(x, organism) and invalid GO Evidence codes
GO Organism GO Organism
updated 12.4 years ago by ★ 7.2k • written 12.4 years ago by ▴ 10
0
votes
0
replies
1.3k
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pathview, when multiple entrzgene ids were mapper to the same node in kegg pathway
pathview pathview
12.4 years ago Luo Weijun ★ 1.6k
0
votes
1
reply
625
views
Limma: how to set the selection by p-value
limma limma
updated 12.4 years ago by 68k • written 12.4 years ago by ★ 13k
0
votes
1
reply
1.3k
views
an error in AnnotationForge
Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy
updated 12.4 years ago by ★ 7.2k • written 12.4 years ago by ▴ 50
0
votes
0
replies
1.1k
views
Problems with 'dataset' argument for parseWorkspace() or read.flowSet()
flowCore flowCore
12.4 years ago Jiang, Mike ★ 1.3k
0
votes
1
reply
818
views
Interpretation of output files
Annotation rtracklayer TSSi Annotation rtracklayer TSSi
updated 12.4 years ago by ★ 1.3k • written 12.4 years ago by ★ 13k
0
votes
1
reply
1.1k
views
Failure to update to Bioconductor 2.12 from bioconductor 2.11
updated 12.4 years ago by 68k • written 12.4 years ago by ★ 13k
0
votes
2
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5.1k
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Bioconductor: CPM and log(CPM) values in EdgeR does not match
RNASeq edgeR RNASeq edgeR
updated 12.4 years ago by ▴ 350 • written 12.5 years ago by ▴ 10
0
votes
6
replies
3.9k
views
RNASeq:- getting Zero Count
RNASeq RNASeq
updated 12.4 years ago by ★ 6.8k • written 12.4 years ago by ▴ 570
0
votes
5
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2.3k
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Rsubread - featureCounts for extracting read counts from De novo assembled transcripts - EdgeR DE analysis
Annotation GO BSgenome cdf BSgenome Rsubread Annotation GO BSgenome cdf BSgenome
12.4 years ago Alan Smith ▴ 150
0
votes
0
replies
1.5k
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Rsubread - featureCounts for extracting read counts from De novo assembled transcripts - EdgeR DE analysis
Annotation GO BSgenome cdf BSgenome Rsubread Annotation GO BSgenome cdf BSgenome
12.4 years ago Wei Shi ★ 3.6k
0
votes
0
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1.5k
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Rsubread - featureCounts for extracting read counts from De novo assembled transcripts
Annotation GO BSgenome cdf BSgenome Rsubread Annotation GO BSgenome cdf BSgenome
12.4 years ago Wei Shi ★ 3.6k
0
votes
0
replies
1.7k
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RIPSeeker multicore option not working fully?
GO biomaRt RIPSeeker GO biomaRt RIPSeeker
12.4 years ago Davis, Wade ▴ 350
0
votes
8
replies
2.3k
views
Filtering BAM files by start position for VariantTools
Coverage Cancer cycle VariantTools Coverage Cancer cycle VariantTools
updated 12.4 years ago by ▴ 250 • written 12.5 years ago by 25k
0
votes
1
reply
1.7k
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using pathview about hsa01100
updated 12.4 years ago by ★ 1.6k • written 12.5 years ago by ▴ 230
0
votes
1
reply
835
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cdf redesign
cdf convert cdf convert
updated 12.4 years ago by 68k • written 12.5 years ago by ▴ 30
0
votes
1
reply
986
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inSilicoMerging package
updated 12.4 years ago by ▴ 60 • written 12.4 years ago by ▴ 100
0
votes
2
replies
855
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difference in results using different edgeR package versions
edgeR edgeR
updated 12.4 years ago by ★ 13k • written 12.4 years ago by ▴ 20
0
votes
3
replies
2.0k
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about running gsva on mac
PROcess GSVA PROcess GSVA
updated 12.4 years ago by ▴ 200 • written 12.5 years ago by ▴ 230
0
votes
0
replies
1.4k
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Rsubread - featureCounts for extracting read counts from De novo assembled transcripts
Annotation GO BSgenome BSgenome Annotation GO BSgenome BSgenome
12.4 years ago Alan Smith ▴ 150
0
votes
0
replies
921
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Problems with 'dataset' argument for parseWorkspace() or read.flowSet()
12.5 years ago Silke Zachariae ▴ 30
0
votes
9
replies
2.0k
views
AnnotationHub man page improvements
updated 12.5 years ago by ★ 7.2k • written 12.5 years ago by ★ 6.5k
0
votes
3
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1.3k
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likely bug in cbind() for DataFrame
updated 12.5 years ago by ★ 11k • written 12.5 years ago by ★ 6.5k
0
votes
0
replies
3.2k
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Pathview with non-KEGG organisms?
Microbiome Pathways GO Visualization Organism graph gage pathview Microbiome Pathways GO
12.5 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
822
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rtracklayer problem on large number of GRanges
Cancer Cancer
12.5 years ago Janet Young ▴ 740
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