0
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4
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1.8k
views
IRanges::unlist in package
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updated 12.4 years ago by 68k • written 12.4 years ago by ▴ 220
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12.4 years ago Ou, Jianhong ★ 1.3k
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basic query to make groups ..
updated 12.4 years ago by ▴ 200 • written 12.4 years ago by ▴ 170
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updated 12.4 years ago by ★ 13k • written 12.4 years ago by ▴ 10
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12.4 years ago Li Liu ▴ 100
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GenomicRanges::reduce feature request
updated 12.4 years ago by ★ 11k • written 12.4 years ago by ★ 4.3k
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6
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DWD method for batch effect removal
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updated 12.4 years ago by ★ 8.2k • written 12.4 years ago by ▴ 100
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updated 12.4 years ago by ★ 8.2k • written 12.4 years ago by ▴ 100
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request
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12.4 years ago Alexey Moskalev ▴ 30
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Limma\'s roast() does not accept weigths in combination with block
updated 12.4 years ago by 53k • written 12.4 years ago by ★ 13k
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1
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1.4k
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答复: an error in AnnotationForge
Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy
12.4 years ago joseph ▴ 50
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2
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DNAStringSetList can't coerce a list?
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12.4 years ago Taylor, Sean D ▴ 250
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Extracting overlapping gene names from a list of peaks
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updated 12.4 years ago by ★ 11k • written 12.4 years ago by ▴ 20
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12.4 years ago Ruben Dries ▴ 10
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ggbio facet_gr example sought
updated 12.4 years ago by ★ 11k • written 12.4 years ago by ★ 1.6k
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2
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ggbio: Data stored twice in 'GGbio' object
updated 12.4 years ago by ★ 11k • written 12.4 years ago by ★ 1.3k
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XCMS query regarding mzXML
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updated 12.4 years ago by 1.6k • written 12.4 years ago by ▴ 570
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EdgeR: general advice on using edgeR for sRNA analysis
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updated 12.4 years ago by 53k • written 12.4 years ago by ▴ 30
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CGHCall problems
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12.4 years ago Guest User ★ 13k
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topGO question
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12.4 years ago Datong Wang ▴ 10
0
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1
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[devteam-bioc] Failure to update to Bioconductor 2.12 from bioconductor 2.11
updated 12.4 years ago by ▴ 10 • written 12.4 years ago by ★ 8.2k
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1
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1.5k
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Error in .testGOFrame(x, organism) and invalid GO Evidence codes
GO Organism GO Organism
updated 12.4 years ago by ★ 7.2k • written 12.4 years ago by ▴ 10
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pathview, when multiple entrzgene ids were mapper to the same node in kegg pathway
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12.4 years ago Luo Weijun ★ 1.6k
0
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1
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623
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Limma: how to set the selection by p-value
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updated 12.4 years ago by 68k • written 12.4 years ago by ★ 13k
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1.3k
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an error in AnnotationForge
Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy
updated 12.4 years ago by ★ 7.2k • written 12.4 years ago by ▴ 50
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Problems with 'dataset' argument for parseWorkspace() or read.flowSet()
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12.4 years ago Jiang, Mike ★ 1.3k
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1
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817
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Interpretation of output files
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updated 12.4 years ago by ★ 1.3k • written 12.4 years ago by ★ 13k
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Failure to update to Bioconductor 2.12 from bioconductor 2.11
updated 12.4 years ago by 68k • written 12.4 years ago by ★ 13k
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Bioconductor: CPM and log(CPM) values in EdgeR does not match
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updated 12.4 years ago by ▴ 350 • written 12.4 years ago by ▴ 10
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RNASeq:- getting Zero Count
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updated 12.4 years ago by ★ 6.8k • written 12.4 years ago by ▴ 570
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Rsubread - featureCounts for extracting read counts from De novo assembled transcripts - EdgeR DE analysis
Annotation GO BSgenome cdf BSgenome Rsubread Annotation GO BSgenome cdf BSgenome
12.4 years ago Alan Smith ▴ 150
0
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0
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Annotation GO BSgenome cdf BSgenome Rsubread Annotation GO BSgenome cdf BSgenome
12.4 years ago Wei Shi ★ 3.6k
0
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12.4 years ago Wei Shi ★ 3.6k
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RIPSeeker multicore option not working fully?
GO biomaRt RIPSeeker GO biomaRt RIPSeeker
12.4 years ago Davis, Wade ▴ 350
0
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8
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Filtering BAM files by start position for VariantTools
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updated 12.4 years ago by ▴ 250 • written 12.4 years ago by 25k
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using pathview about hsa01100
updated 12.4 years ago by ★ 1.6k • written 12.4 years ago by ▴ 230
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1
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cdf redesign
cdf convert cdf convert
updated 12.4 years ago by 68k • written 12.4 years ago by ▴ 30
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1
reply
985
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inSilicoMerging package
updated 12.4 years ago by ▴ 60 • written 12.4 years ago by ▴ 100
0
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2
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updated 12.4 years ago by ★ 13k • written 12.4 years ago by ▴ 20
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3
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about running gsva on mac
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updated 12.4 years ago by ▴ 200 • written 12.4 years ago by ▴ 230
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0
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Rsubread - featureCounts for extracting read counts from De novo assembled transcripts
Annotation GO BSgenome BSgenome Annotation GO BSgenome BSgenome
12.4 years ago Alan Smith ▴ 150
0
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0
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921
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Problems with 'dataset' argument for parseWorkspace() or read.flowSet()
12.4 years ago Silke Zachariae ▴ 30
0
votes
9
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2.0k
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AnnotationHub man page improvements
updated 12.4 years ago by ★ 7.2k • written 12.4 years ago by ★ 6.5k
0
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3
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likely bug in cbind() for DataFrame
updated 12.4 years ago by ★ 11k • written 12.4 years ago by ★ 6.5k
0
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0
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Pathview with non-KEGG organisms?
Microbiome Pathways GO Visualization Organism graph gage pathview Microbiome Pathways GO
12.4 years ago Luo Weijun ★ 1.6k
0
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0
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817
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rtracklayer problem on large number of GRanges
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12.4 years ago Janet Young ▴ 740
0
votes
6
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error when loading mzR
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updated 12.4 years ago by ★ 13k • written 12.4 years ago by ★ 13k
0
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0
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HTqPCR normalization issue ?
Normalization HTqPCR Normalization HTqPCR
12.4 years ago alessandro.guffanti@genomnia.com ▴ 330
0
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0
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Error converting SBML to graph Object using R SBML
Network graph convert rsbml Network graph convert rsbml
12.4 years ago Michael Lawrence ★ 11k
0
votes
2
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RIPSeeker multicore option not working fully?
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updated 12.4 years ago by ★ 8.2k • written 12.4 years ago by ▴ 350
46,707 results • Page 531 of 935
Recent ...
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Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond by Ludwig Geistlinger ▴ 80
When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…
Comment: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond by Sean Davis 21k
Just FYI, I added a github issue to track: https://github.com/OSCA-source/OSCA.advanced/issues/27
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Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond
Guitar R package requires update due to dependency GenomicFeatures
please provide a BibTeX citation for "Advanced Single-Cell Analysis with Bioconductor"
Answer: Limma-voom sample weights and impact on DEG numbers
Answer: Limma-voom sample weights and impact on DEG numbers
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