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1.2k
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how to rank affy probesets by their probe-effect magnitude
probe affy RPA probe affy RPA
13.7 years ago Leo Lahti ▴ 40
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Useful information about Ensembl release 67 mart databases
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13.7 years ago Thomas Maurel ▴ 800
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5
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updated 13.7 years ago by 6.7k • written 13.7 years ago by ▴ 30
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updated 13.7 years ago by 6.7k • written 13.7 years ago by ▴ 440
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technical and biological replicates in the same Exprset - Agi4x44
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updated 13.7 years ago by ▴ 10 • written 13.7 years ago by 53k
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suppressMessages does not work with endoapply?
updated 13.7 years ago by 25k • written 13.7 years ago by ▴ 370
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updated 13.7 years ago by ▴ 180 • written 13.7 years ago by ▴ 440
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Problem running HumMeth27QCReport after upgrading R to 2.15
updated 13.7 years ago by ▴ 90 • written 13.7 years ago by ★ 13k
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methylumi on Infiniium27k idat files
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13.7 years ago Briggs, Chris ▴ 20
0
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1
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947
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problem with large logFC value
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updated 13.7 years ago by ▴ 230 • written 13.7 years ago by ▴ 20
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question about how analysis affymetrix huex st array
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updated 13.7 years ago by ★ 3.9k • written 13.7 years ago by ★ 1.3k
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13.7 years ago JiangZhengyu ▴ 40
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edgeR, comparing models
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updated 13.7 years ago by 53k • written 13.7 years ago by ▴ 220
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design and contrast matrix for limma time series without replicates
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13.7 years ago Gordon Smyth 53k
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cell cycle modeling
13.7 years ago Anja Mirenska ▴ 30
0
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1
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limma p-value calculated how?
limma limma
updated 13.7 years ago by ▴ 280 • written 13.7 years ago by ▴ 180
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Using BrainArray mappings with oligo package
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updated 13.7 years ago by ★ 4.3k • written 13.7 years ago by ▴ 600
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updated 13.7 years ago by ▴ 440 • written 13.7 years ago by ▴ 120
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build/check reports for ENVISIONQuery, IdMappingRetrieval on OSX
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13.7 years ago Day, Roger S ▴ 60
0
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aCGH package. Plots: X axis label problems
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13.7 years ago Sarah JugurnauthLittle ▴ 20
0
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740
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GO analysis using chromosomal ranges
GO GO
updated 13.7 years ago by 25k • written 13.7 years ago by ▴ 130
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3
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help with mapping statistics summary
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updated 13.7 years ago by 25k • written 13.7 years ago by ▴ 50
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PANTHER in R.... Gene lists in sigPathway?
sigPathway sigPathway
13.7 years ago Voke AO ▴ 760
0
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1
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Rsamtools: scanBamFlag bug?
Rsamtools Rsamtools
updated 13.7 years ago by 25k • written 13.7 years ago by ▴ 10
0
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how to design a model matrix
13.7 years ago wang peter ★ 2.0k
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13
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PWMscoreStartingAt and ambiguous subject seqs
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updated 13.7 years ago by 16k • written 13.7 years ago by ▴ 740
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updated 13.7 years ago by 68k • written 13.7 years ago by ▴ 300
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Excessive memory requirements of PING or bug?
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updated 13.7 years ago by ▴ 20 • written 13.7 years ago by ▴ 10
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6
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how to design matrix by edgeR
updated 13.7 years ago by 53k • written 13.7 years ago by ★ 2.0k
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GSEA with methylation data
updated 13.7 years ago by 21k • written 13.7 years ago by ★ 1.1k
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BioC 2012
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edgeR : input and design matrix help
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13.7 years ago KJ Lim ▴ 420
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8
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updated 13.7 years ago by ★ 4.3k • written 13.7 years ago by ▴ 130
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13.7 years ago Julie Zhu ★ 4.3k
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edgeR input and design matrix help
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13.7 years ago KJ Lim ▴ 420
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13.7 years ago Julie Zhu ★ 4.3k
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necessity of moderated t statistic and false discoveries for small predefined gene list?
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updated 13.7 years ago by ▴ 260 • written 13.7 years ago by ★ 2.0k
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13.7 years ago Lisa Hopcroft ▴ 40
0
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1
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miRNA and other small RNAs
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updated 13.7 years ago by ▴ 330 • written 13.7 years ago by ▴ 70
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subreddit for R related stuff
13.7 years ago Robert M. Flight ▴ 280
0
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0
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13.7 years ago Luz Mayela Soto ▴ 10
0
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11
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updated 13.7 years ago by 68k • written 13.7 years ago by ▴ 80
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450K annotation: discrepancy between GEO GPL and Bioconductor annotation
Annotation Annotation
updated 13.7 years ago by ★ 4.2k • written 13.7 years ago by ▴ 60
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TEQC see all the reads with a given coverage
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13.7 years ago nac ▴ 280
0
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fitting growth curve
updated 13.7 years ago by ▴ 120 • written 13.7 years ago by ▴ 810
0
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1
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795
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Recommend some R packages source code to read.
updated 13.7 years ago by 68k • written 13.7 years ago by ▴ 970
0
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15k
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error under "hclust" for expression data
Clustering Clustering
updated 13.7 years ago by ▴ 610 • written 13.7 years ago by ▴ 180
0
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Limma, design matrix, lmfit Coefficients not estimable error
limma limma
13.7 years ago Rainy Gorilla ▴ 30
46,742 results • Page 588 of 935
Recent ...
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Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase by DamionLedner99 • 0
thanks for sharing!!! https://cran.r-project.org/
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Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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