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864
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\"normalize a subset of affy data\" AND \"R help function\"
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14.2 years ago Thomas J Hardcastle ▴ 180
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14.2 years ago Guest User ★ 13k
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updated 14.2 years ago by 25k • written 14.2 years ago by ★ 2.0k
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RE : RE : rsamtools installation
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updated 14.2 years ago by ▴ 140 • written 14.2 years ago by 25k
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Problem installing KEGGSOAP
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updated 14.2 years ago by ★ 8.2k • written 14.2 years ago by ▴ 140
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Addition of Orangutan genome to BSgenomes
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updated 14.2 years ago by ★ 6.8k • written 14.2 years ago by ▴ 10
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\"normalize a subset of affy data\" AND \"R help function\"
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14.2 years ago Guest User ★ 13k
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803
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package Genominator with ShortRead-annotation question
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PhD position available in Innsbruck, Austria
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14.2 years ago Johannes Rainer ▴ 80
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updated 14.2 years ago by ▴ 250 • written 14.2 years ago by ▴ 110
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readCelFile function in Starr is crashing R
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updated 14.2 years ago by ★ 6.5k • written 14.2 years ago by ★ 13k
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updated 14.2 years ago by 25k • written 14.2 years ago by ▴ 250
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14.2 years ago Aric Gregson ▴ 270
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convert GeneSetCollection to a list
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14.2 years ago john herbert ▴ 560
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updated 14.2 years ago by ▴ 120 • written 14.2 years ago by ▴ 740
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Error while building ExpressionSet from scratch....
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14.2 years ago boczniak767 ▴ 740
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updated 14.2 years ago by ▴ 880 • written 14.2 years ago by ▴ 10
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updated 14.2 years ago by 25k • written 14.2 years ago by ▴ 270
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updated 14.2 years ago by ▴ 60 • written 14.2 years ago by ★ 13k
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compilation error for rtracklayer
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updated 14.2 years ago by 21k • written 14.2 years ago by ▴ 570
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14.2 years ago Kripa R ▴ 180
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updated 14.2 years ago by 25k • written 14.2 years ago by ★ 13k
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14.2 years ago neeraj rana ▴ 100
0
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5
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Problems installing sva and bladderbatch
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updated 14.2 years ago by 6.7k • written 14.2 years ago by ▴ 30
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DEseq for sample clustering
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updated 14.2 years ago by ★ 13k • written 14.2 years ago by ★ 13k
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DESeq - read counts
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updated 14.2 years ago by ★ 13k • written 14.2 years ago by ▴ 10
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extract introns
updated 14.2 years ago by 25k • written 14.2 years ago by ▴ 90
0
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[ChIPpeakAnno] - What's the "annotatePeakInBatch" function expected running time ?
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updated 14.2 years ago by ▴ 50 • written 14.2 years ago by ★ 4.3k
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making valid model matrix for using SNM package
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14.2 years ago Wendy Qiao ▴ 360
46,716 results • Page 611 of 935
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Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k
Have you told featureCounts to do strand-specific counting? As pointed out by Frances Turner, you can lose reads if they overlap the gene …
Answer: Clarification on counting in Rsubread (featureCounts) by Frances Turner ▴ 10
You should look at the summary files produced by feature counts. This gives a breakdown of what happened to reads that were not assigned. Y…
Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function by Aaron Lun ★ 29k
The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Votes
Answer: Clarification on counting in Rsubread (featureCounts)
C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results
C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results
A: Conversion from counts to FPKM
Answer: Incosistencies in buildSNNGraph() function
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