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Votes
0
votes
0
replies
607
views
SimpeAffy: how to get/generate qcdef file?
affy
affy
15.5 years ago
manjary singh
▴ 10
0
votes
0
replies
1.1k
views
arrayQualityMetrics and Bioconductor Case Studies
Microarray
probe
Microarray
probe
15.5 years ago
Chintanu
▴ 310
0
votes
1
reply
1.1k
views
Odd Plotting Behavior with lymphGate flowStats
15.5 years ago
Aric Gregson
▴ 270
0
votes
2
replies
1.3k
views
FW: A software engineer/application developer position
updated 15.5 years ago by
John Zhang
★ 2.9k • written 15.5 years ago by
Jianhua Zhang
▴ 20
0
votes
1
reply
2.5k
views
Limit for chromosomal regions in biomaRt?
biomaRt
biomaRt
updated 15.5 years ago by
Steffen
▴ 500 • written 15.5 years ago by
Christian Ruckert
▴ 170
0
votes
0
replies
2.1k
views
Postdoctoral positions at Harvard
Genetics
Cancer
Yeast
Genetics
Cancer
Yeast
15.5 years ago
Edo Airoldi
▴ 10
0
votes
0
replies
913
views
get full variance per gene from DESeq
DESeq
DESeq
15.5 years ago
Graham Thomas
▴ 20
0
votes
0
replies
949
views
FW: Software engineer/application developer position
Cancer
Cancer
15.5 years ago
John Zhang
★ 2.9k
0
votes
3
replies
1.3k
views
Nested Design (Again) & Subset WithinArray Correlation
Microarray
Microarray
updated 15.5 years ago by
Gordon Smyth
53k • written 15.5 years ago by
Y. Osee Sanogo
▴ 80
0
votes
2
replies
1.0k
views
beadarray methylation annotation question
Annotation
Annotation
updated 15.5 years ago by
Sean Davis
21k • written 15.5 years ago by
Alice E. Arcury-Quandt
▴ 20
0
votes
1
reply
1.7k
views
DESeq question correlation
DESeq
DESeq
updated 15.5 years ago by
Naomi Altman
★ 6.0k • written 15.5 years ago by
Pete Shepard
▴ 240
0
votes
7
replies
1.7k
views
Affy PA calls
affy
affy
15.5 years ago
Loren Engrav
★ 1.0k
0
votes
0
replies
1.2k
views
flowStats Plot quadrantGate Filter Result Smooth=FALSE
flowStats
flowStats
15.5 years ago
Aric Gregson
▴ 270
0
votes
2
replies
1.2k
views
Accessing attributes of object
updated 15.5 years ago by
Joern Toedling
▴ 450 • written 15.5 years ago by
David
▴ 860
0
votes
1
reply
1.1k
views
A question on scaling normalization proposed by Mark Robinson Group
Normalization
Normalization
updated 15.5 years ago by
Mark Robinson
★ 1.1k • written 15.5 years ago by
sunghee OH
▴ 50
0
votes
0
replies
1.2k
views
A question on baySeq
Normalization
DEGseq
DESeq
Normalization
DEGseq
DESeq
15.5 years ago
sunghee OH
▴ 50
0
votes
1
reply
1.3k
views
Ringo and dye swaps
Ringo
Ringo
updated 15.5 years ago by
Joern Toedling
▴ 450 • written 15.5 years ago by
jbethune
▴ 10
0
votes
1
reply
1.0k
views
Agi4x44PreProcess - Replicated Genes Error
Annotation
probe
Agi4x44PreProcess
Annotation
probe
Agi4x44PreProcess
updated 15.5 years ago by
Georg Otto
▴ 120 • written 15.5 years ago by
Samantha England
▴ 40
0
votes
2
replies
1.9k
views
GEOquery: GDS2MA failure
convert
convert
updated 15.5 years ago by
Sean Davis
21k • written 15.5 years ago by
Philipp Pagel
▴ 190
0
votes
1
reply
952
views
Nested Design (Again) & Subset WithinArray Correlation
Microarray
limma
Microarray
limma
updated 15.5 years ago by
Y. Osee Sanogo
▴ 30 • written 15.5 years ago by
Gordon Smyth
53k
0
votes
1
reply
1.4k
views
A question on DESeq
edgeR
DEGseq
DESeq
edgeR
DEGseq
DESeq
updated 15.5 years ago by
Simon Anders
★ 3.8k • written 15.5 years ago by
sunghee OH
▴ 50
0
votes
0
replies
1.0k
views
Convert arabidopsis TAIR6 coordinates to TAIR9?
convert
convert
15.5 years ago
Xiaohui Wu
▴ 280
0
votes
10
replies
2.4k
views
xmapcore get intronic sequence
xmapcore
xmapcore
updated 15.5 years ago by
Tim Yates
▴ 250 • written 15.5 years ago by
Steve Taylor
▴ 280
0
votes
3
replies
1.3k
views
Normalization of expression values
Normalization
probe
Normalization
probe
updated 15.5 years ago by
Steve Lianoglou
★ 13k • written 15.5 years ago by
dorothyc
▴ 140
0
votes
1
reply
1.5k
views
Agi4x44PreProcess: INPUT DATA DOES NOT CONTAIN - Sequence and chr_coord SCANN THE DATA USING AFE 9.5.3.1 Error in read.AgilentFE(targets, makePLOT = …
hgug4112a
Agi4x44PreProcess
hgug4112a
Agi4x44PreProcess
updated 15.5 years ago by
Neel Aluru
▴ 460 • written 15.5 years ago by
Turner, Julia
▴ 20
0
votes
3
replies
3.1k
views
Heatmaps for one sample?
updated 15.5 years ago by
Thomas Girke
★ 1.7k • written 15.5 years ago by
Sarah Bonnin
▴ 10
0
votes
1
reply
1.6k
views
write.XStringView/write.XStringSet highly inefficient (solved)
Cancer
BSgenome
PROcess
GLAD
BSgenome
Cancer
BSgenome
PROcess
GLAD
BSgenome
updated 15.5 years ago by
Steve Lianoglou
★ 13k • written 15.5 years ago by
Michael Dondrup
▴ 550
0
votes
1
reply
1.3k
views
Loading ontologies from OBO foundry?
graph
ontoTools
graph
ontoTools
updated 15.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 15.5 years ago by
stubben
▴ 80
0
votes
5
replies
2.2k
views
Illumina chip probe sequences
probe
probe
updated 15.5 years ago by
Sean Davis
21k • written 15.5 years ago by
Peter Bazeley
▴ 50
0
votes
0
replies
1.0k
views
biomaRt problem
biomaRt
biomaRt
15.5 years ago
anupam sinha
▴ 270
0
votes
2
replies
7.5k
views
Error in Heatmap: Could not find function "heatmap.2"
PROcess
marray
PROcess
marray
updated 15.5 years ago by
Benjamin Otto
▴ 830 • written 15.5 years ago by
Samantha England
▴ 40
0
votes
2
replies
1.4k
views
Enrichment analysis for chromosomes
updated 15.5 years ago by
Martin Morgan
25k • written 15.5 years ago by
Bhatti, Gaurav
▴ 30
0
votes
1
reply
868
views
write.XStringView/write.XStringSet highly inefficient
PROcess
PROcess
updated 15.5 years ago by
Martin Morgan
25k • written 15.5 years ago by
Michael Dondrup
▴ 550
0
votes
3
replies
2.0k
views
ChIP-chip sequence bias not removed
Normalization
vsn
Starr
Normalization
vsn
Starr
updated 15.5 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 15.5 years ago by
Edwin Groot
▴ 230
0
votes
1
reply
2.3k
views
Question on Hypergeometric P value generated from makeVennDiagram in ChIPpeakAnno
Transcription
GO
ChIPpeakAnno
Transcription
GO
ChIPpeakAnno
updated 15.5 years ago by
Julie Zhu
★ 4.3k • written 15.5 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.8k
views
Problem installing qpgraph
qpgraph
qpgraph
updated 15.5 years ago by
Sean Davis
21k • written 15.5 years ago by
Joerg Linde
▴ 20
0
votes
1
reply
864
views
Problem with AnnotationDbi::loadAnnDbPkgIndex()
AnnotationDbi
AnnotationDbi
15.5 years ago
cstrato
★ 3.9k
0
votes
1
reply
1.7k
views
beadarray illumina Human610-Quadv1_B.bpm
crlmm
crlmm
updated 15.5 years ago by
Matthew Ritchie
▴ 1000 • written 15.5 years ago by
Nolwenn Le Meur
▴ 80
0
votes
3
replies
1.6k
views
browseURL
15.5 years ago
Yuan Jian
▴ 250
0
votes
0
replies
671
views
problem using Alternative CDF environments, CdfEnvAffy
Cancer
Cancer
15.5 years ago
Hervé Pagès
16k
0
votes
2
replies
1.4k
views
building a refseq-based transcriptDb: warnings of interest?
TranscriptDb
TranscriptDb
updated 15.5 years ago by
Hervé Pagès
16k • written 15.5 years ago by
Vincent J. Carey, Jr.
6.7k
0
votes
3
replies
1.7k
views
ShortRead QA
Sequencing
ShortRead
Sequencing
ShortRead
updated 15.5 years ago by
Martin Morgan
25k • written 15.5 years ago by
Alex Gutteridge
▴ 650
0
votes
2
replies
1.1k
views
rtracklayer issues with other packages?
GO
BSgenome
BSgenome
rtracklayer
GO
BSgenome
BSgenome
rtracklayer
updated 15.5 years ago by
Martin Morgan
25k • written 15.5 years ago by
mattia pelizzola
▴ 200
0
votes
2
replies
1.3k
views
next-generation sequencing and embryogenisis
Sequencing
SAGE
Coverage
Sequencing
SAGE
Coverage
updated 15.5 years ago by
Steve Shen
▴ 330 • written 15.5 years ago by
Ziping Zhang
▴ 20
0
votes
1
reply
1.5k
views
Problem for install DESeq
DESeq
DESeq
updated 15.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 15.5 years ago by
Jinyan Huang
▴ 190
0
votes
2
replies
1.6k
views
flowQ on WinXP: Error in matrix for dimnames
PROcess
flowQ
PROcess
flowQ
updated 15.5 years ago by
Nishant Gopalakrishnan
▴ 340 • written 15.5 years ago by
Karin Breuer
▴ 20
0
votes
3
replies
5.9k
views
heatmap.2 - change column & row locations; angle / rotate
updated 15.5 years ago by
Amos Folarin
▴ 20 • written 15.5 years ago by
k. brand
▴ 420
0
votes
1
reply
1.7k
views
downloading different kinds of microarray data
Genetics
GEOquery
Genetics
GEOquery
updated 15.5 years ago by
Sean Davis
21k • written 15.5 years ago by
Alex Levitchi
▴ 30
0
votes
1
reply
2.1k
views
Problem with function limmaCtData in HTqPCR package: "leading minor of order 2 is not positive definite"
HTqPCR
HTqPCR
updated 15.5 years ago by
Heidi Dvinge
★ 2.0k • written 15.5 years ago by
Bass, Kevin
▴ 10
0
votes
1
reply
1.0k
views
htQPCR
updated 15.5 years ago by
Heidi Dvinge
★ 2.0k • written 15.5 years ago by
David
▴ 860
46,735 results • Page
663 of 935
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Replies
Comment: Confirm that OpenStats will not be archived (pryr dependency)
by
Marina
• 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error
by
ansley.r.burtch
• 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Comment: limpa analysis advice
by
Gordon Smyth
53k
I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
Answer: Confirm that OpenStats will not be archived (pryr dependency)
by
shepherl
4.3k
As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq
by
Michael Love
43k
Yes, I find that the LFC shrinkage and its corresponding stat `svalue` if you use lfcShrink with a threshold often returns more reliable ge…
Votes
Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
Answer: Array weights in dpcDE
Answer: Array weights in dpcDE
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