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1
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1.1k
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Error importing XYS
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15.6 years ago Jinyan Huang ▴ 50
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1
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biomaRt bug - shuffling getBM headers and content
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15.6 years ago Jinyan Huang ▴ 190
0
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Nimblegen 385K CpG Island Plus Promoter Arrays
updated 15.6 years ago by ▴ 450 • written 15.6 years ago by ▴ 190
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Help reg Genome view
updated 15.6 years ago by 68k • written 15.6 years ago by ▴ 20
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Problem in affypdnn package
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0
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Limma for GoldenGate Methylation Cancer Panel I
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15.6 years ago Jinyan Huang ▴ 50
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15.6 years ago Jeremiah H. Savage ▴ 110
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updated 15.6 years ago by 68k • written 15.6 years ago by ▴ 230
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Question on Limma technical replicate
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15.6 years ago Gordon Smyth 53k
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installing 'lme4' package fails
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how to find out whether some Affy probe sets are Alu contaminated?
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15.6 years ago James Anderson ▴ 820
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error/problem with biomaRt gene symbol query
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biomaRt Error : Affy Human Exon array annotation
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GSEABase and Broad Inst Sets
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edgeR question
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15.6 years ago chunlai@umich.edu ▴ 20
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15.6 years ago cstrato ★ 3.9k
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Question on Limma technical replicate
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15.6 years ago Leleacquario@libero.it ▴ 20
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AgiMicroRna and ComBat
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15.6 years ago Segal, Corrinne ▴ 40
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error from rsamtools on 1000 genomes
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about lumi support for Illumina HT-12 v4
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15.6 years ago Pan Du ★ 1.2k
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Clustering RNA-seq profiles and DE analysis using edgeR
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updated 15.6 years ago by ▴ 60 • written 15.6 years ago by 53k
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Need help with pdInfoBuilder package for human ST arrays
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Example on constructing AffyBatch object
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Problems with arrayQualityMetrics
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updated 15.6 years ago by ▴ 110 • written 15.6 years ago by ▴ 150
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Clustering RNA-seq profiles using edgeR
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updated 15.6 years ago by ▴ 60 • written 15.6 years ago by 53k
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GO term enrichment
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Network plot
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updated 15.6 years ago by 21k • written 15.6 years ago by ▴ 100
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updated 15.6 years ago by ★ 3.9k • written 15.6 years ago by ▴ 20
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15.6 years ago Naomi Altman ★ 6.0k
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updated 15.6 years ago by ▴ 30 • written 15.6 years ago by ▴ 30
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15.6 years ago Xiaokuan Wei ▴ 230
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common genes in different platforms
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Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db'; RS-DBI driver -database locked
updated 15.6 years ago by 16k • written 15.6 years ago by ▴ 40
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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
Confirming my understanding after executing the code provided: this is similar to a design formula of `~0+mouse+group+group:allele`, except…
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Thanks heaps Gordon. I went with option 1 and no normalisation and all seems to have worked well. Cheers, Andrew
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Flagging protein groups as likely contaminants in this way will be fine for a limpa analysis. The `Cont_` proteins can optionally stay in f…
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Aaron Lun was a PhD student in my Lab back in 2015, when he posted the answers about allele-specific expression that you and Mike Love have…
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You just need the mouse identifier (controls baseline) and the group specific allelic effect.
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