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1
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1.1k
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Question about plateCore
Annotation plateCore Annotation plateCore
updated 15.9 years ago by ▴ 40 • written 15.9 years ago by ▴ 70
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[Bioc-sig-seq] ChIPpeakAnno get sequences from ranged data
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15.9 years ago Julie Zhu ★ 4.3k
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error in limma read.images in linux ubuntu
15.9 years ago Elmer Fernández ▴ 80
0
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silent data corruption in flowFlowJo, and fix
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15.9 years ago Gosink, John ▴ 20
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Gene IDs returned by RankProd topGene command
RankProd RankProd
15.9 years ago Blumenberg, Miroslav ▴ 30
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IRanges: as.matrix.RangesMatching not found with NAMESPACE
IRanges IRanges
updated 15.9 years ago by ★ 1.6k • written 15.9 years ago by ▴ 550
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updated 15.9 years ago by ▴ 400 • written 15.9 years ago by ▴ 110
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GCRMA Normalization Differences between Windows and MAC
Normalization gcrma Normalization gcrma
updated 15.9 years ago by ▴ 260 • written 15.9 years ago by ▴ 10
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Averaging duplicate probes in an RGList object
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15.9 years ago Tom Wenseleers ▴ 60
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Heatmap: row labels & dendogram
updated 15.9 years ago by ▴ 400 • written 15.9 years ago by ▴ 110
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0
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668
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Heatmap: row labels & dendogram
15.9 years ago danieladna ▴ 110
0
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3
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where is the "getHomolog" function in biomaRt?
Annotation biomaRt Annotation biomaRt
updated 15.9 years ago by ★ 13k • written 15.9 years ago by ▴ 260
0
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949
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GDD or alternative
updated 15.9 years ago by ★ 11k • written 15.9 years ago by ▴ 20
0
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2
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updated 15.9 years ago by 21k • written 15.9 years ago by ▴ 110
0
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Call for papers (Deadline Extended): BCBGC-10, USA, July 2010
15.9 years ago John Edward ▴ 80
0
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1
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1.0k
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building annotation package for porcine
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updated 15.9 years ago by ★ 7.2k • written 15.9 years ago by ▴ 840
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biomaRt - ensembl - proxy - NCBI36/hg18 - problems
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15.9 years ago Anthony Ferrari ▴ 110
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ChIPpeakAnno get sequences from ranged data
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15.9 years ago Julie Zhu ★ 4.3k
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Kmeans help
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updated 15.9 years ago by ▴ 110 • written 15.9 years ago by ▴ 30
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Not loading flowViz package
flowViz flowViz
updated 15.9 years ago by ▴ 580 • written 15.9 years ago by ▴ 80
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limma lmFit error: Coefficients not estimable
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updated 15.9 years ago by ▴ 30 • written 15.9 years ago by 53k
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4
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how to do cross species annotation?
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updated 15.9 years ago by ▴ 60 • written 15.9 years ago by ▴ 260
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1
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1.1k
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Error: cannot allocate vector of size 13.7 Mb
updated 15.9 years ago by 21k • written 15.9 years ago by ▴ 100
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897
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a question related to nested R loop
updated 15.9 years ago by ★ 4.3k • written 15.9 years ago by ▴ 10
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Beadarray data manipulation
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15.9 years ago Jean-Pierre Desvignes ▴ 60
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org.Sc.sgd.db: Yeast ensembl ID to entrez ID conversion problem
GO Yeast GO Yeast
15.9 years ago Julie Zhu ★ 4.3k
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BiomaRt query
biomaRt biomaRt
updated 15.9 years ago by ★ 13k • written 15.9 years ago by ▴ 60
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help on reading Agilent 44k 2 colour
Genetics limma Genetics limma
updated 15.9 years ago by ▴ 190 • written 15.9 years ago by ▴ 60
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R/Maanova Tutorial
updated 15.9 years ago by ▴ 240 • written 15.9 years ago by ▴ 20
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Agilent one colour
updated 15.9 years ago by 21k • written 15.9 years ago by ▴ 320
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arrayQualityMetrics: Binning grid too coarse for current (small) bandwidth
arrayQualityMetrics arrayQualityMetrics
updated 15.9 years ago by ▴ 110 • written 15.9 years ago by ▴ 50
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reverse engineering package
minet qpgraph minet qpgraph
updated 15.9 years ago by ★ 3.4k • written 15.9 years ago by ★ 1.2k
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Ecoli antisense library
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what is the website to get gene name from Affy probe set ID?
probe affy probe affy
updated 15.9 years ago by ▴ 220 • written 15.9 years ago by ▴ 820
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64-bit R
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Question about iFlow
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updated 15.9 years ago by ▴ 580 • written 15.9 years ago by ▴ 70
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Version package in release
updated 15.9 years ago by 25k • written 15.9 years ago by ▴ 120
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questions regarding simpleaffy and justMAS
Normalization affy Normalization affy
updated 15.9 years ago by 68k • written 15.9 years ago by ▴ 820
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Calculation of $stdev.unscaled and $sigma values by lmfit() in Limma package
15.9 years ago Gordon Smyth 53k
3
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Annotation for a GEO data set
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updated 15.9 years ago by 21k • written 15.9 years ago by ▴ 20
0
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987
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function similar to phyper function that can handle 3 or more gene lists
15.9 years ago k. brand ▴ 420
0
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1
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879
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xps: convert a data frame to ExprTreeSet
convert convert
updated 15.9 years ago by ★ 3.9k • written 15.9 years ago by ▴ 330
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1.8k
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Calculation of $stdev.unscaled and $sigma values by lmfit() in Limma package
updated 15.9 years ago by ★ 7.4k • written 15.9 years ago by ▴ 10
1
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3
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1.3k
views
Get gene structure information: use biomaRt or other annotation packages?
Annotation biomaRt Annotation biomaRt
updated 15.9 years ago by ★ 3.4k • written 15.9 years ago by ★ 4.3k
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MArray into data.frame for SPIA package
limma marray SPIA limma marray SPIA
15.9 years ago Gordon Smyth 53k
0
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2
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932
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GO.db and org.XX.eg.db: update frequency?
Annotation GO Annotation GO
updated 15.9 years ago by 25k • written 15.9 years ago by ★ 4.3k
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2
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xps: returns only 21 records
Preprocessing Preprocessing
updated 15.9 years ago by ★ 3.9k • written 15.9 years ago by ▴ 330
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votes
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reply
1.7k
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GEOquery problem
updated 15.9 years ago by 21k • written 15.9 years ago by ▴ 50
0
votes
0
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request: calculate coverage with weight on RangedData object
Coverage Cancer IRanges Coverage Cancer IRanges
15.9 years ago Janet Young ▴ 740
46,738 results • Page 678 of 935
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Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
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