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0
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0
replies
720
views
R/Bioc workshops at UC Riverside
Clustering
Clustering
15.9 years ago
Thomas Girke
★ 1.7k
0
votes
5
replies
2.4k
views
Problems installing Rcurl
updated 15.9 years ago by
Kasper Daniel Hansen
★ 6.5k • written 15.9 years ago by
Martino Barenco
▴ 110
0
votes
0
replies
1.6k
views
compare function in CMA package
Classification
CMA
Classification
CMA
15.9 years ago
Javier Pérez Florido
▴ 840
0
votes
4
replies
1.9k
views
Positive correlation between dye-swap technical replicates
Normalization
Clustering
probe
limma
GLAD
Normalization
Clustering
probe
limma
GLAD
15.9 years ago
Michał Góralski
▴ 40
0
votes
0
replies
773
views
removing probes from affybatch error
cdf
probe
cdf
probe
15.9 years ago
Jenny Drnevich
★ 2.0k
0
votes
1
reply
1.2k
views
Shortread and filtering of duplicate reads
ShortRead
ShortRead
updated 15.9 years ago by
Martin Morgan
25k • written 15.9 years ago by
Johannes Waage
▴ 50
0
votes
2
replies
2.3k
views
HTqPCR - how to read data file with multiple samples
HTqPCR
HTqPCR
updated 15.9 years ago by
Heidi Dvinge
★ 2.0k • written 16.0 years ago by
Adam Kiezun
▴ 50
0
votes
5
replies
1.6k
views
ggTools Error
GGtools
GGtools
updated 15.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 15.9 years ago by
Paul Geeleher
★ 1.3k
0
votes
6
replies
3.0k
views
lumiR error
Microarray
GO
Microarray
GO
updated 15.9 years ago by
Pan Du
★ 1.2k • written 15.9 years ago by
Paul Sanfilippo
▴ 70
0
votes
1
reply
810
views
Limma: Three biological repeats, one technical repeat
updated 15.9 years ago by
Wolfgang Huber
★ 13k • written 15.9 years ago by
aculeata@gmail.com
▴ 10
0
votes
0
replies
881
views
limma: Help with time course experiment, common ref design
GO
limma
GO
limma
15.9 years ago
n.taris@voila.fr
▴ 10
0
votes
0
replies
1.1k
views
affylmGUI MA-plot using Gene Symbols
Microarray
Annotation
hgu133plus2
probe
affy
affylmGUI
Microarray
Annotation
hgu133plus2
15.9 years ago
Chuming Chen
▴ 140
0
votes
2
replies
1.5k
views
affylmGUI .cel loading problem
Microarray
Microarray
updated 15.9 years ago by
rcaloger
▴ 500 • written 16.0 years ago by
Christine Tomlins
▴ 10
0
votes
3
replies
1.8k
views
Package on clinical data analysis
updated 15.9 years ago by
Claus Mayer
▴ 340 • written 15.9 years ago by
David
▴ 860
0
votes
5
replies
2.0k
views
from TF DNA binding motif to downstream genes?
Transcription
Biostrings
Transcription
Biostrings
updated 15.9 years ago by
Patrick Aboyoun
★ 1.6k • written 15.9 years ago by
Paul Shannon
★ 1.1k
0
votes
0
replies
1.3k
views
obtaining GOID from nuID
GO
goTools
lumi
GO
goTools
lumi
15.9 years ago
Md.Mamunur Rashid
▴ 260
0
votes
2
replies
3.4k
views
Error messages from eBayes()(limma)
Microarray
Microarray
updated 15.9 years ago by
James W. MacDonald
68k • written 15.9 years ago by
julin@aecom.yu.edu
▴ 80
0
votes
2
replies
1.5k
views
methylumi
Microarray
methylumi
Microarray
methylumi
updated 15.9 years ago by
Sean Davis
21k • written 15.9 years ago by
Paul Sanfilippo
▴ 70
0
votes
2
replies
1.8k
views
EBImage installation on Mac OS X 10.6
EBImage
EBImage
updated 15.9 years ago by
Gregoire Pau
▴ 310 • written 16.0 years ago by
Milan Esner
▴ 10
0
votes
0
replies
1.1k
views
Extract masked sequences
BSgenome
BSgenome
BSgenome
BSgenome
15.9 years ago
Mercier Eloi
▴ 30
1
vote
2
replies
1.9k
views
Problems compiling lumi on Solaris Sparc and R 2.9.0
beadarray
lumi
beadarray
lumi
updated 15.9 years ago by
Seth Falcon
★ 7.4k • written 15.9 years ago by
ngrundma
▴ 20
0
votes
7
replies
2.2k
views
(no subject)
edgeR
edgeR
updated 15.9 years ago by
John Zhang
★ 2.9k • written 16.0 years ago by
Leila Farajzadeh
▴ 10
0
votes
0
replies
1.2k
views
pcaMethods and categorical NAs
impute
impute
15.9 years ago
Antoni Picornell
▴ 40
0
votes
4
replies
1.2k
views
help needed for GCRMA
gcrma
gcrma
updated 15.9 years ago by
James W. MacDonald
68k • written 15.9 years ago by
Memon, Farhat N
▴ 50
0
votes
2
replies
1.5k
views
R question on symbolic variables
updated 15.9 years ago by
Axel Klenk
★ 1.1k • written 15.9 years ago by
Chris Fenton
▴ 80
0
votes
0
replies
1.0k
views
ChIPpeakAnnot -names field requried
ChIPSeq
chipseq
ChIPSeq
chipseq
15.9 years ago
Julie Zhu
★ 4.3k
0
votes
4
replies
1.7k
views
biomaRt error
biomaRt
biomaRt
updated 15.9 years ago by
Paul Leo
▴ 970 • written 16.0 years ago by
Iain Gallagher
▴ 930
0
votes
2
replies
1.5k
views
Reproducibility of DNAcopy segmentation
DNAcopy
DNAcopy
updated 16.0 years ago by
Sean Davis
21k • written 16.0 years ago by
Ross Patterson
▴ 20
0
votes
0
replies
1.2k
views
globaltest 5.0.2
Survival
globaltest
Survival
globaltest
16.0 years ago
Goeman, J.J. MSTAT
▴ 150
0
votes
4
replies
2.2k
views
Problems installing RCurl
updated 16.0 years ago by
Chao-Jen Wong
▴ 580 • written 16.0 years ago by
Sunny Srivastava
▴ 350
0
votes
4
replies
9.4k
views
Agilent 2-color Microarray data analysis tutorial
Microarray
Visualization
Clustering
Microarray
Visualization
Clustering
updated 16.0 years ago by
Martin Morgan
25k • written 16.0 years ago by
Chuming Chen
▴ 140
0
votes
0
replies
809
views
GOHyperGResult in a data.frame, possible NAMESPACE problem?
charm
charm
16.0 years ago
Robert Castelo
★ 3.4k
0
votes
0
replies
1.4k
views
cghMCR package - Jianhua Zhang
DNAcopy
cghMCR
DNAcopy
cghMCR
16.0 years ago
Luz G Alonso
▴ 20
0
votes
1
reply
1.1k
views
background correction within beadarray
Microarray
beadarray
Microarray
beadarray
updated 16.0 years ago by
Mark Dunning
★ 1.1k • written 16.0 years ago by
blackgore
▴ 10
0
votes
5
replies
1.2k
views
Drosophila Genome build used for GeneChip Drosophila-2 CDF?
updated 16.0 years ago by
James W. MacDonald
68k • written 16.0 years ago by
Dávid Molnár
▴ 30
0
votes
3
replies
2.0k
views
arrayQualityMetrics Error
cdf
affy
arrayQualityMetrics
cdf
affy
arrayQualityMetrics
updated 16.0 years ago by
Groot, Philip de
▴ 630 • written 16.0 years ago by
Ramzi TEMANNI
▴ 160
0
votes
0
replies
919
views
BioC Course 27-29 Jan 10: Introduction to R and Bioconductor
Microarray
Preprocessing
Microarray
Preprocessing
16.0 years ago
Patrick Aboyoun
★ 1.6k
0
votes
6
replies
1.9k
views
qPCRnorm
qpcrNorm
qpcrNorm
updated 16.0 years ago by
Heidi Dvinge
★ 2.0k • written 16.0 years ago by
Andreia Fonseca
▴ 810
0
votes
4
replies
2.1k
views
Get genomic sequences
biomaRt
rtracklayer
biomaRt
rtracklayer
updated 16.0 years ago by
Paul Leo
▴ 970 • written 16.0 years ago by
Johannes Waage
▴ 50
0
votes
3
replies
1.4k
views
Fwd: cannot install SNPlocs.Hsapiens.dbSNP.20090506
SNPlocs
SNPlocs
updated 16.0 years ago by
Dan Strumpf
▴ 70 • written 16.0 years ago by
Sean Davis
21k
0
votes
1
reply
1.1k
views
cannot install SNPlocs.Hsapiens.dbSNP.20090506
updated 16.0 years ago by
James W. MacDonald
68k • written 16.0 years ago by
Dan Strumpf
▴ 70
0
votes
3
replies
1.7k
views
GOHyperGResult in a data.frame, possible NAMESPACE problem?
GO
Biobase
annotate
PROcess
GOstats
Category
AnnotationDbi
GO
Biobase
annotate
PROcess
updated 16.0 years ago by
Seth Falcon
★ 7.4k • written 16.0 years ago by
Robert Castelo
★ 3.4k
0
votes
2
replies
5.8k
views
problem when try to install GenomicFeatures packages
updated 16.0 years ago by
Chao-Jen Wong
▴ 580 • written 16.0 years ago by
Changbin Du
▴ 10
0
votes
1
reply
1.1k
views
Help on ROCR analysis
Genetics
ASSIGN
Genetics
ASSIGN
updated 16.0 years ago by
Wolfgang Huber
★ 13k • written 16.0 years ago by
Susan Bosco
▴ 80
0
votes
6
replies
2.0k
views
Regarding KEGGgraph
Pathways
Network
PROcess
Pathways
Network
PROcess
updated 16.0 years ago by
Wolfgang Huber
★ 13k • written 16.0 years ago by
anupam sinha
▴ 270
0
votes
1
reply
1.8k
views
problems : getting error : Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0010817" not found
multtest
GOstats
biomaRt
multtest
GOstats
biomaRt
updated 16.0 years ago by
James W. MacDonald
68k • written 16.0 years ago by
Andreia Fonseca
▴ 810
0
votes
0
replies
922
views
SNP/GWAS - snp id to Pubmed ID through dbSNP
SNP
SNP
16.0 years ago
Paul Evans
▴ 180
0
votes
3
replies
1.1k
views
Limma with contrasts
Microarray
Normalization
probe
affy
limma
Microarray
Normalization
probe
affy
limma
updated 16.0 years ago by
James W. MacDonald
68k • written 16.0 years ago by
Matthew Willmann
▴ 60
0
votes
0
replies
1.2k
views
2 post-doc and one PhD positions at the Bioinformatics and Genomics Department of the Centro de Investigaciones Príncipe Felipe, Valencia, Spain.
Sequencing
Sequencing
16.0 years ago
Ana Conesa
▴ 340
0
votes
0
replies
1.1k
views
Limma with contrasts
Microarray
Normalization
probe
affy
limma
Microarray
Normalization
probe
affy
limma
16.0 years ago
Matthew Willmann
▴ 60
46,699 results • Page
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Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
ATpoint
★ 5.0k
> and I first used the normalized counts You would not use these normalized counts for PCA as they're not on log2 scale. As such, the feat…
Comment: EuroBioC2026 abstract submission is open!
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Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…
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For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
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C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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