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question regarding BSGenome/Biostrings
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updated 17.2 years ago by ★ 6.0k • written 17.2 years ago by ▴ 130
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some help for Limma Factorial design for two color data.
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updated 17.2 years ago by 21k • written 17.2 years ago by ▴ 220
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Error in plot.window(...) : need finite 'xlim' values
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layout cDNA in limma
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clone id to chromosome position
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17.2 years ago Clara de Dessous Chéri ▴ 130
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(no subject)
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updated 17.2 years ago by 25k • written 17.2 years ago by ▴ 500
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help with defining batch slot in cellHTS2
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17.2 years ago yan zhou ▴ 80
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biomaRt doesn't load RCurl automatically
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17.2 years ago Shi, Tao ▴ 720
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17.2 years ago Laure de Meilleurmobile ▴ 90
46,723 results • Page 731 of 935
Recent ...
Replies
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Votes
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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