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4
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1.5k
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Assigning values to environments - merging them?
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analysis ChIP-seq data
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PI/senior computational biologist in Ireland
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17.6 years ago Edward Hsi ▴ 10
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How I can extract the information of Probe and Probesets location on the microarray
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updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 10
0
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Do my Limma results look "normal"?
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updated 17.6 years ago by ★ 1.3k • written 17.6 years ago by 53k
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17.6 years ago Samuel Wuest ▴ 330
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Question about Package EBarrays
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cellHTS2 error in writeReport
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using genomic DNA as universal reference
probe probe
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updated 17.6 years ago by 25k • written 17.6 years ago by ▴ 410
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Possible Bug in readExpressionSet
Cancer Biobase Cancer Biobase
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'Factorial Design' package question
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0
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0
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LIMMA - Intensity normalization methods
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Why makeoutput() function is not included in hopach 1.4.3 version
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limma, p values and missing data or weights 0
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updated 17.6 years ago by 53k • written 17.6 years ago by ▴ 10
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Can not concatenate more than 129 data values in R on Linux
updated 17.6 years ago by ▴ 90 • written 17.6 years ago by ▴ 50
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Do my Limma results look "normal"?
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updated 17.6 years ago by ★ 5.5k • written 17.6 years ago by ★ 1.3k
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Gene Signature Score Prediction
updated 17.6 years ago by 21k • written 17.6 years ago by ▴ 640
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Problems about list files on a FTP site
updated 17.6 years ago by 25k • written 17.6 years ago by ▴ 450
0
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snpMatrix - Creating a 1-column snp.matrix by subsetting a larger snp.matrix
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17.6 years ago Richard Pearson ▴ 390
0
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Gene expression analysis
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17.6 years ago Naomi Altman ★ 6.0k
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0
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Microarray Normalization probe limma Microarray Normalization probe limma
17.6 years ago Gordon Smyth 53k
0
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limma and marray data import problem
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updated 17.6 years ago by 53k • written 17.6 years ago by ▴ 90
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Limma design question (model interactions)
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updated 17.6 years ago by ★ 6.0k • written 17.6 years ago by ▴ 160
0
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17.6 years ago rich@thevillas.eclipse.co.uk ▴ 10
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CDF properties
cdf probe cdf probe
updated 17.6 years ago by ▴ 950 • written 17.6 years ago by ▴ 70
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GOstats with yeast2
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updated 17.6 years ago by ★ 5.5k • written 17.6 years ago by ▴ 370
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1
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1.9k
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limma - complex design matrix / blocks / random effects
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updated 17.6 years ago by ★ 6.0k • written 17.6 years ago by ▴ 220
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Reading GTFs
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17.6 years ago Karl Forner ▴ 70
0
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0
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lumi annotation package
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12
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Rgraphviz, R 2.7.0 and Windows XP
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updated 17.6 years ago by ★ 2.0k • written 17.6 years ago by ▴ 10
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sigPathway on Agilent data
sigPathway sigPathway
17.6 years ago Srinivas Iyyer ▴ 600
0
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1
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limma and single-dye (R) gpr
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updated 17.6 years ago by ★ 1.3k • written 17.6 years ago by ▴ 230
0
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0
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Sweave & limma mystery
updated 17.6 years ago by ▴ 160 • written 17.6 years ago by ▴ 190
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exon.pmcdf: not a valid package?
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updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 10
0
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2
replies
881
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limma wrongly reading data
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updated 17.6 years ago by ★ 13k • written 17.6 years ago by ▴ 90
0
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3
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Using limma with Agilent array data
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updated 17.6 years ago by 21k • written 17.6 years ago by ▴ 90
0
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replies
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Importing sample annotation from ArrayExpress
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17.6 years ago Markus Schmidberger ▴ 380
0
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3
replies
1.2k
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limma and marray data import problem
Microarray PROcess Microarray PROcess
updated 17.6 years ago by 53k • written 17.6 years ago by ▴ 90
0
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missing probes from illuminaHumanv3ProbeID.db
Annotation Cancer bgx Annotation Cancer bgx
17.6 years ago Lynn Amon ▴ 280
46,726 results • Page 750 of 935
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Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k
I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by ATpoint ★ 5.0k
Yes, still it's not reproducible, yet hard to debug. I cannot reproduce myself either.
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0
Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…
Answer: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0
Still happening in a clean install
Votes
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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