0
votes
2
replies
2.1k
views
how can I use the limma result as input in topGo
GO limma topGO GO limma topGO
updated 18.2 years ago by ▴ 400 • written 18.2 years ago by ▴ 40
0
votes
0
replies
628
views
how to estimate dye effect based on a very specific experiment design
18.2 years ago yan zhou ▴ 80
0
votes
0
replies
648
views
error in qc AffyQCReport package
hgu95av2 hgu95av2
18.2 years ago Mayte Suarez-Farinas ▴ 510
0
votes
0
replies
1.1k
views
made4, memory issues
Network Clustering Cancer Yeast made4 Network Clustering Cancer Yeast made4
18.2 years ago Aedin Culhane ▴ 510
0
votes
0
replies
604
views
Limma: factorial design and batch effect
18.2 years ago Jason Pear ▴ 90
0
votes
2
replies
728
views
optimizazion cluster in Heatmap
updated 18.2 years ago by 68k • written 18.2 years ago by ▴ 70
0
votes
0
replies
2.1k
views
Median-Interquartile Normalization
Microarray SystemsBiology Annotation GO Preprocessing Clustering Cancer Yeast Organism GO
18.2 years ago McGee, Monnie ▴ 300
0
votes
4
replies
1.3k
views
Question about a packages not yet in Bioconductor: AffyProbeMiner in R260 under windows
updated 18.2 years ago by ★ 5.5k • written 18.2 years ago by ▴ 720
0
votes
1
reply
1.2k
views
GOTERM
GO GO
updated 18.2 years ago by ★ 5.5k • written 18.2 years ago by ▴ 50
0
votes
1
reply
791
views
Limma and Imagene flags
updated 18.2 years ago by ▴ 40 • written 18.2 years ago by ▴ 250
0
votes
0
replies
1.1k
views
Limma: how to combine duplicateCorrelation, dyeeffect and arrayweights?
limma PROcess limma PROcess
18.2 years ago dorthe.belgardt@medisin.uio.no ▴ 40
0
votes
2
replies
1.5k
views
Problem running eBayes/lmFit
probe probe
18.2 years ago elliot harrison ▴ 230
0
votes
1
reply
1.3k
views
GO analysis for time-series data
GO GO
updated 18.2 years ago by ▴ 130 • written 18.2 years ago by ▴ 600
0
votes
1
reply
616
views
BeadArray: Associating a gene list file to probe summary data.
updated 18.2 years ago by ▴ 460 • written 18.2 years ago by ▴ 20
0
votes
1
reply
1.6k
views
cannot allocate vector of size 73 kb, in made4
updated 18.2 years ago by ★ 6.5k • written 18.2 years ago by ▴ 130
0
votes
2
replies
4.0k
views
failure in GDS2eSet() in package GEOquery
Microarray OneChannel TwoChannel DataImport bridge GEOquery Microarray OneChannel bridge
updated 18.2 years ago by 21k • written 18.2 years ago by ▴ 290
0
votes
10
replies
2.3k
views
how to build a GOstats-compatible annotation package for plasmodium falciparum?
Annotation Yeast GOstats Annotation Yeast GOstats
updated 18.2 years ago by ▴ 30 • written 18.2 years ago by ★ 1.1k
0
votes
1
reply
818
views
using GSEABase objects to perform GSEA
updated 18.2 years ago by 25k • written 18.2 years ago by ▴ 200
0
votes
3
replies
1.7k
views
Affymetrix reannotation
Annotation panp Annotation panp
updated 18.2 years ago by ★ 7.2k • written 18.2 years ago by ▴ 30
0
votes
3
replies
645
views
tpmap2bpmap in affxparser
updated 18.2 years ago by ★ 6.5k • written 18.2 years ago by ▴ 30
0
votes
1
reply
719
views
Question Loading Imagene Files into Limma
18.2 years ago Sally ▴ 250
0
votes
0
replies
699
views
MICROARRAY AND R COURSES at Imperial College Dec 2007
18.2 years ago North, Bernard V ▴ 120
0
votes
3
replies
1.5k
views
Using beadarray for bead level data, what is the ProbeID with 1000's of beads?
probe beadarray probe beadarray
updated 18.2 years ago by ★ 3.6k • written 18.2 years ago by ▴ 270
0
votes
4
replies
1.2k
views
(no subject)
updated 18.2 years ago by ▴ 10 • written 18.2 years ago by ▴ 20
0
votes
0
replies
1.4k
views
Job opening at Merck, NJ
18.2 years ago Liaw, Andy ▴ 360
0
votes
0
replies
800
views
RMA vs gcRMA on 2 groups of samples
Normalization gcrma Normalization gcrma
18.2 years ago Bogdan Tanasa ▴ 10
0
votes
3
replies
1.8k
views
Rgraphviz installation problem on " chmod: cannot access '~/library/Rgraphviz/libs/*': No such file or directory"
Rgraphviz Rgraphviz
updated 18.2 years ago by ▴ 510 • written 18.2 years ago by ▴ 130
0
votes
1
reply
817
views
Beadarray:Loading two summary data files
updated 18.2 years ago by ▴ 460 • written 18.2 years ago by ▴ 20
0
votes
0
replies
608
views
maSigPro questions
18.2 years ago Ingrid H. G. Østensen ▴ 700
0
votes
6
replies
2.1k
views
RMA vs gcRMA on 2 groups of samples
Normalization GO gcrma Normalization GO gcrma
updated 18.2 years ago by ★ 6.0k • written 18.2 years ago by ▴ 670
0
votes
1
reply
1.4k
views
PCR Primer Design tools in BioC?
updated 18.2 years ago by 16k • written 18.2 years ago by ▴ 20
0
votes
0
replies
699
views
warning message for duplicateCorrelation
18.2 years ago Gordon Smyth 53k
0
votes
7
replies
1.6k
views
org.Dm.egACCNUM2EG
GO GO
updated 18.2 years ago by ★ 7.2k • written 18.2 years ago by ▴ 260
0
votes
0
replies
1.4k
views
limma reading Agilent One-Color Data
18.2 years ago elliot harrison ▴ 230
0
votes
2
replies
1.6k
views
Rgraphviz edge attributes can't be changed on Mac
Biobase geneplotter Rgraphviz Biobase geneplotter Rgraphviz
updated 18.2 years ago by ▴ 540 • written 18.2 years ago by ★ 1.6k
0
votes
6
replies
1.1k
views
motif searching with variable length gaps
updated 18.2 years ago by ▴ 30 • written 18.2 years ago by ▴ 20
0
votes
0
replies
975
views
again: warning message for duplicateCorrelation (Limma)
18.2 years ago dorthe.belgardt@medisin.uio.no ▴ 40
0
votes
4
replies
2.8k
views
Installing beadarray
annotate geneplotter beadarray AnnotationDbi annotate geneplotter beadarray AnnotationDbi
updated 18.2 years ago by 21k • written 18.2 years ago by ▴ 270
0
votes
0
replies
1.0k
views
exonmap package - MySQL error
exonmap exonmap
18.2 years ago Dykema, Karl ▴ 90
0
votes
4
replies
1.6k
views
Affymetrix Command Console CEL files
affy affy
updated 18.2 years ago by ★ 4.3k • written 18.2 years ago by ▴ 490
0
votes
4
replies
1.5k
views
Opinions on array design, normalization, and linear modeling with LIMMA
Sequencing Coverage Normalization limma Sequencing Coverage Normalization limma
updated 18.2 years ago by ▴ 60 • written 18.2 years ago by ▴ 890
0
votes
3
replies
940
views
warning message for duplicateCorrelation
updated 18.2 years ago by 16k • written 18.2 years ago by ▴ 40
0
votes
0
replies
718
views
markersymol filter problem
Annotation biomaRt Annotation biomaRt
18.2 years ago Marc Carlson ★ 7.2k
0
votes
0
replies
835
views
re About ndups error chol(V)
18.2 years ago Gordon Smyth 53k
0
votes
0
replies
534
views
Opinions on array design, normalization, and linear modeling with LIMMA
18.2 years ago Yong Yin ▴ 60
0
votes
1
reply
4.8k
views
lmFit Error: "comparison of these types is not implemented"
Microarray Microarray
updated 18.2 years ago by 53k • written 18.2 years ago by ▴ 20
0
votes
2
replies
852
views
beadarray error: Did not find a slot called : se.exprs
18.2 years ago Yogi Sundaravadanam ▴ 320
0
votes
0
replies
1.2k
views
contrasts in limma and missing values
limma limma
18.2 years ago Gordon Smyth 53k
0
votes
0
replies
692
views
Programming
18.2 years ago Courtney Heard ▴ 10
0
votes
0
replies
963
views
Errors in importing cel files into oneChannelGUI
probe oneChannelGUI probe oneChannelGUI
18.2 years ago Ester Feldmesser ▴ 60
46,719 results • Page 772 of 935
Recent ...
Replies
Comment: Development of MSstat workflow to analyze DIA time series data by Gordon Smyth 53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k
Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…
Comment: Error in creating BSGenome package by Nguyen • 0
I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…
Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k
There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
Awards • All
Popular Question to mohammedtoufiq91 ▴ 10
Popular Question to Lluís Revilla Sancho ▴ 760
Commentator to James W. MacDonald 68k
Great Question to fl ▴ 20
Popular Question to Gordon Smyth 53k
Locations • All
Denmark, 33 minutes ago
United States, 54 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
Japan, 1 hour ago
France, 1 hour ago
Traffic: 1075 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6